Nine (not so simple) steps: a practical guide to using machine learning in microbial ecology journals.asm.org/doi/full/10.11…

Eukfinder: a pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data. biorxiv.org/content/10.110…

Create Stunning ‘Circular Bar plots’ in R ggplot2 with minimal code. by Allan victor link.medium.com/ARYazmIC3Fb #rstats #ggplot2 #dataviz

If you are an R user and want to learn python buff.ly/48odUD5

Come study with us in Prague!!!

AllTheBacteria - all bacterial genomes assembled, available and searchable | bioRxiv ⁦John Lees⁩ ⁦Wei Shen 沈 伟⁩ biorxiv.org/content/10.110…

Grammar check your texts directly from Posit PBC RStudio! RStudio doesn't have a good integration with tools like Grammarly and LanguageTool which makes it very hard to proofread your notebooks etc. I created a small R package to help. Check it out! rfsaldanha.github.io/rspell

Predicting microbial growth conditions from amino acid composition biorxiv.org/cgi/content/sh… #bioRxiv

We are looking for a postdoc to join our lab! If you are interested in Alpine ecosystems and microbiomes we would love to have you onboard. Please apply via: careers.epfl.ch/job/Sion-Postd…

Unassigning bacterial species for microbiome studies journals.asm.org/doi/full/10.11…

Excited to share Vclust! It's a fast and accurate tool for calculating intergenomic similarities (like ANI) and clustering virus/#phage genomes/contigs according to ICTV and MIUViG standards. 💻 Tool: github.com/refresh-bio/vc… 📄 Preprint: biorxiv.org/content/10.110… Thread! 1/6 ↓

RIBAP: a comprehensive bacterial core genome annotation pipeline for pangenome calculation beyond the species level genomebiology.biomedcentral.com/articles/10.11…

Alpine lakes harbor diverse, endemic and structurally unique RNA viruses biorxiv.org/content/10.110…

MAGinator enables accurate profiling of de novo MAGs with strain-level phylogenies nature.com/articles/s4146…

CompareM2 is a genomes-to-report pipeline for comparing microbial genomes biorxiv.org/content/10.110…

The ever amazing Artyom Egorov in our group has made a new visualisation tool for comparative genomics. Makes particularly beautiful images of phages, plasmids, other MGEs or regions of prokaryotic genomes 😍 biorxiv.org/cgi/content/sh…

I wrote about this beautiful paper. 🧬 Cyanobacteria exposed to shorter days (in the lab) "rewire" their membrane lipids to anticipate cold weather. When those cells are plunged into cold water, they have "two or three-times higher survival" than cells exposed to longer days.

🎉 Exciting news! We've just published MVP: a Modular Viromics Pipeline 🦠✨ journals.asm.org/doi/epub/10.11…

Je viens de faire mon #eXit! L’exode de X est massif. Ne perdez pas un seul de vos abonnés. Grâce à #HelloQuitX j’ai inscrit 156 nouveaux passagers pour partir vers #BlueSky & #Mastodon. Retrouvez automatiquement vos communautés le #20Janvier via app.helloquitx.com !