The benefits of joint calling in practice, powering advances in schizophrenia & other common diseases research. This is why we do what we do. #genomics

Mikhael Dito Manurung Ming "Tommy" Tang Yara Sanchez Corrales Gali Bai Matthew Young For those interested: New Terra Blog post on CellBender terra.bio/harness-machin…

Human geneticist know its been a nightmare to call reliable #CNVs from #exome. Fortunately Talkowski Lab helps calling CNVs on our Broad Institute-sequenced samples. Image our excitement with the new benchmarked algorithm #GATK-gCNV biorxiv.org/cgi/content/sh… #bioRxiv! Awesome!

Read Terra's blog on the collaboration to adapt Ultima Genomics data for GATK variant calling, which includes workspace preloaded with sample data and the fully configured analysis workflow: terra.bio/updated-gatk-p…

Exciting to see hardware accelerated GATK workflows made available on Terra so anyone can enjoy the huge speed boost and lower cost

📣 New #GATK webinar! Learn how to do Whole-Genome Analysis with DRAGEN-GATK 🧬🧬🧬 October 21, 2022 from 10:30AM–12:30PM EST. Register today to get the zoom invite! #Bioinformatics #training #genomics gatk.broadinstitute.org/hc/en-us/artic…

📣 New GATK release! 4.3.0.0 adds stable support for the Ultima Genomics flow-based sequencing platform among other feature improvements. Release notes here: github.com/broadinstitute…

📣 Don't miss these interactive online #bioinformatics workshops — smash that register button today! terra.bio/get-trained-on…

Don't miss our interactive online workshop on DRAGEN-GATK this Friday, 10:30AM–12:30PM EST — Register today! gatk.broadinstitute.org/hc/en-us/artic…

Our team is pulling out all the stops for this special interactive session on DRAGEN-GATK! Including making fan art… credit to Derek Caetano-Anolles x.com/gatk_dev/statu…

Last chance to register for our interactive online workshop this Friday — Just 2 hours to learn the ins and outs of running the open source DRAGEN-GATK pipeline! gatk.broadinstitute.org/hc/en-us/artic…

Two hours of hands-on training tomorrow could save you two months of googling! Register now for our online interactive workshop on DRAGEN-GATK, the latest version of our open source Best Practices for whole genome analysis. gatk.broadinstitute.org/hc/en-us/artic…

More like fresh new toke

Nvidia Clara Parabricks has accelerated #bwa, #gatk HaplotypeCaller, mutect2, DeepVariant, bam -> fastq, QC tools, functionally equivalent to community versions, up to _80X_ faster, FREE for R&D, + available with NVIDIA AI Enterprise support: nvidia.com/en-us/clara/ge…

Parabricks 4.0 is FREE for R&D, and the team made prebuilt workflows in #wdl and #nextflow available: developer.nvidia.com/blog/democrati… . They're on Terra (terra.bio/nvidias-clara-…), up to 24X faster, up to 2X cheaper, and publicly available on GitHub: github.com/clara-parabric…

Pretending to be a biologist this week - am learning so much in the Cambridge Bioinformatics Training / Broad Institute course on using the GATK Dev Team for variant discovery 🧬

Using a deep generative model, CellBender models and denoises droplet-based single-cell data and improves multiple downstream analyses. Broad Institute Patrick Ellinor GATK Dev Team nature.com/articles/s4159…

GATK 4.6 is out with some much-requested changes to no-call behavior, plus an important CRAM bug fix. Check out the release notes (github.com/broadinstitute…). This is definitely a recommended upgrade for all GATK users! #gatk

As of May 1st 2025, GATK forums will be community-driven and self-moderated. They will not be moderated or monitored by a GATK team member. We encourage members of the community to continue to engage with each other on these forums. gatk.broadinstitute.org/hc/en-us/commu…