Haven't been using GitHub a lot since this year, but this is so cool! Going to git push all my recent codes now😃 skyline.github.com/baigal628/2021

Single-cell spatial analysis of tumor immune architecture in diffuse large B-cell lymphoma pubmed.ncbi.nlm.nih.gov/35675517/

Our MIRA paper (rdcu.be/cU4hz) is out! MIRA is a Python package for single cell RNA-seq, ATAC-seq, and multimodal RNA-seq + ATAC-seq analysis. #singlecell #chromatin #epigenetics #NCIITCR 1/9

We are recruiting a Director of Translational Science at GV20 Therapeutics linkedin.com/jobs/view/3326…

We are happy to present our new method T1K to genotype highly polymorphic genes (KIR, HLA, ...) from RNA-seq/WGS/WES data. I'm grateful for the kind mentoring from Heng Li Bo Li Xiaole Shirley Liu and the hard work of Gali Bai. The preprint is available at biorxiv.org/content/10.110…

Don’t miss this great book if you are interested in learning Bioinformatics!🤩😎

Our lab website is online MD Anderson Cancer Center ! mdanderson.org/research/depar… We're seeking highly motivated students, postdocs, and research assistants pursuing a career in cancer immunology and/or computational biology. Don't hesitate to apply!

#BOG23 Efficient and accurate KIR and HLA genotyping with massively parallel sequencing data now published in Genome Research ow.ly/H3Bf50OmVki

Today #BaskinEngineering Professors David Deamer & Mark Akeson won a Golden Goose Award for their invention of nanopore sequencing, a technology which has supported complex genomics sequencing efforts & enabled significant discoveries over the past 2 decades. news.ucsc.edu/2023/09/golden…

Very grateful for the support from PhRMA Foundation on our quest to conquer cancer by enhancing anti-tumor immunity. We keep looking for motivated postdocs and students to work together towards this goal. If you're interested, feel free to apply. [email protected]

Computational genomics Postdoc & PhD openings @ Duke🧑‍💻🧬🥰 Postings: academicjobsonline.org/ajo/jobs/26447 | careers.iscb.org/jobs/view/8654 ; Lab website: yi-zhang-compbio-lab.github.io ; Pls RT🙌

Thrilled to share the first preprint from my lab! We losslessly compressed FM-index using a novel technique called run-block compressed BWT (RBBWT). Building upon it, we implemented the Centrifuger method for taxonomic classification on sequencing data. biorxiv.org/content/10.110…

Hey Oxford Nanopore community! Where's the best place to deposit nanopore raw sequencing files (fast5s)? We can upload fastqs to SRA, but they don't take unbasecalled data. It seems like ENA also prefers basecalled data. Any recommendations?

Want to learn more about the tricks and tips for generating ONT Ultra-long DNA? The T2T Consortium and UCSC SeqTech Center are hosting a Technology-focused Webinar next Thursday with a group of experts. Register today: bit.ly/3PFTa2f Adam Phillippy

Use of PacBio MAS-Seq/Kinnex single-cell RNA-Seq on clear-cell Renal Cell Carcinoma (ccRCC), an aggressive and lethal form of cancer. Comprehensive isoform discovery - 40% previously uncharacterized, of those 37% possess a complete protein-coding ORF. Found cell type- and

The first manuscript from my lab is officially published in Genome Biology! This is also my first corresponding author paper :D. We will keep improving Centrifuger, adding new features, and developing peripheral tools for microbiome analysis in the future. genomebiology.biomedcentral.com/articles/10.11…

I am thrilled to be presenting our recent work in Brooks Lab and Boeger Lab on chromatin accessibility profiling with nanopore long-read sequencing at FragileNucleosome next week. Thank you for this incredible opportunity!

Our lab is hiring! We are looking for a postdoc in the area of immunology/microbiology+ML, or in pure method/software development. More information about our lab at: mourisl.github.io