Intoducing HARU: DTW-based Oxford Nanopore adaptive sampling on an @Xilinx Kria FPGA! This tiny 300$ module is 2X faster than a 30k$ 36-core server (at a fraction of power consumption) for end-to-end sDTW DNA mapping (including IO overheads). See arxiv.org/abs/2211.07340 for info.

99% of the programmers only know the basic git commands (push, pull and commit) These 10 git commands will save you hours of research time when you're stuck:

Are you a Pandas user but want to get up and running with Polars? Then join me at my workshop on 6th December at 1400 GMT. Early bird tickets available until next Thursday eventbrite.com/e/up-running-w…

Anyone using something they ❤️ for data pipeline? I want a visible system where things flow from generation <-> human review, tracking state updates and version changes.

Do you need an intro to analyzing (prote)omics data? This series of lectures may be helpful. We aimed to make them short & accessible. Enjoy watching & learning! youtube.com/playlist?list=…

"Querying SQLite databases with DuckDB" Enjoyed watching this fast-paced video by Mark Needham demoing how to use #DuckDB's query engine to run analytics queries against data in a #SQLite file. 5:50 well spent 🦆! youtube.com/watch?v=ogge3k…

Hi ISCB Student Council, I remember when I was a younger researcher, working with RSG France - JeBiF into adding (or translating) Wikipedia -> Wikipédia en français articles to expand global knowledge in #Bioinformatics. I just notice that both #snakemake and Nextflow have been removed...

Happy to share the peer-reviewed version of our pre-print with the Guigó Lab at PLOS Biology ! Centre for Genomic Regulation (CRG) Day-night and seasonal variation of human gene expression across tissues using GTEx data. journals.plos.org/plosbiology/ar…

RDFLib 6.3.0 has been released and published to PyPI. This is a minor release with fixes and new features. For more information, see github.com/RDFLib/rdflib/… #RDF #SPARQL #Python #RDFLib #SemanticWeb

“lambda has the benefit of making the code compact and foreboding. Plus, it prevents people from trying to add meaningful names, documentation or type-hints to the thing that is about to unfold.” — dabeaz github.com/dabeaz/blog/bl…

Don’t do the Wilcoxon statmodeling.stat.columbia.edu/2015/07/13/don…

Four-Day Workweeks Make People Happier, More Productive, Study Shows - Blue Zones shar.es/afDujs

How do we revive our devastated planet? We don't need to speculate, as one nation has already done it. So what's stopping us? theguardian.com/commentisfree/…

We're excited to share our manuscript describing COBIND, a novel tool for the identification of transcription factor co-binding patterns with non-negative matrix factorization biorxiv.org/content/10.110… 1/9

Khoa Vu Roland Kays FYI, your video is by Jonna Jinton, a Swedish artist who lives in the Arctic and blogs about life there (this video of course a parody). youtube.com/@jonnajinton

🗜️Ultrafast one-pass FASTQ data preprocessing, quality control, and deduplication using fastp 📃onlinelibrary.wiley.com/doi/full/10.10… 📀github.com/OpenGene/fastp #⃣ #DataCompression #Fastq #Bioinformatics

Kiwi PyCon Elliana May - @[email protected] Thijs Bruineman Gabor Szarnyas At 15:20, Hopsworks' Fabio Buso (Fabio Buso) and MotherDuck's Till Döhmen (Till Döhmen) will give a talk at PyData Amsterdam titled "MLOps on the fly: Optimizing a feature store with DuckDB and ArrowFlight". amsterdam2023.pydata.org/cfp/talk/L3WFC…

We are happy to announce that the first #FederatedEGA dataset is now live on our website, published by the Polish Node Have a look here 👉 ega-archive.org/datasets/EGAD5…

Bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants buff.ly/4bviuBB

Modern Data Technology Stacks for 90% of Use Cases with Minimal Costs (Non Streaming): 1. Localstack + Blob Storage + polars data + Iceberg + Metabase A cost-effective setup for most use cases. Localstack emulates cloud services, Blob Storage handles data storage, Polars is used