A comparative approach that predicts any modifications in RNA (or DNA) using raw Oxford Nanopore signals. Although simple, It outperforms the current SOTA. academic.oup.com/nar/advance-ar… w/ Ivan Vujaklija Siniša Biđin, Marin Volarić, Sara Bakić, Zhe Li, Jianjun Liu and Roger Foo

Predicting gene expression from histone marks using chromatin deep learning models depends on histone mark function, regulatory distance and cellular states academic.oup.com/nar/advance-ar…

The ONLY way to restore firefighter confidence is to put an arsonist in charge of an evidence-based fire extinguishing agenda

The award winning reporter, Andrew Norfolk, who broke the grooming scandal says that far from covering up the problem, Starmer made the prosecutions possible

"I'm super excited that I got the EMBO Installation Grant," says new grantee Jelena Bujan Ruđer Bošković Institute in #Croatia. She studies ants on Adriatic Islands to understand adaptations to #climatechange. Read more: embo.org/people/adriati…

Introducing the FunCoup Cytoscape App: multi-species network analysis and visualization, integrating the #FunCoup database with the Cytoscape ecosystem. academic.oup.com/bioinformatics…

🚨Job alert! 🚨 We are hiring a computational postdoc or PhD student focusing on - modeling gene regulation using single cell data - investigating the mechanisms of regulatory genetic variants PhD student: employment.ku.dk/all-vacancies/… Postdoc: employment.ku.dk/faculty/?show=…

A great opportunity - great science, great place to work and live, and an extremely knowledgeable and kind PI.

A new FANTOM6 manuscript, a fantastic collaboration with Magda Bienko lab. This is about transcontacting intronic RNAs (TIRs). Intron-derived RNAs specifically interact with chromatin, showing interesting patterns particularly, but not only, in neurons biorxiv.org/content/10.110…

A great opportunity in a great group!

Very proud to share this work just out in NAR: spearheaded by Jamie Auxillos and Arnauld Stigliani: TLDR-seq, a method for 5’ to 3’ end long-read sequencing of capped RNAs regardless of 3’ end polyadenylation, based on the Oxford Nanopore platform. (1/4) tinyurl.com/3c2ksdmr

We are so happy to share our latest paper "CHAS infers cell type-specific signatures in bulk brain acetylation studies of neurological and psychiatric disorders". cell.com/cell-reports-m… UK Dementia Research Institute Institute of Psychiatry, Psychology & Neuroscience Imperial Medicine

🧬 Our annotation structure covers everything from biological sample prep to library creation, sequencing, and processed files, ensuring data quality, comparability, and ease of use across experiments. #bioinformatics #dataquality Explore more: 🔗 doi.org/10.1093/gigasc…

Our publication in  Genome Research presents a new paradigm in genome de novo assembly - using AI instead of classical algorithms. Here, we replace the Layout phase with Graph Neural Networks

🌐We've implemented this annotation strategy on a user-hosted web platform, enabling easy data import, query, and export, making it perfect for both internal documentation and large-scale collaborations 🔗 doi.org/10.1093/gigasc…

🔥 Today in Cell! Drs. Borzo Gharibi & Silvia Santos (SantosLaB) led this study showing that GATA3 is required and sufficient for #amniogenesis and BMP and Wnt signals from the amnion contribute to amniogenesis. The Francis Crick Institute bit.ly/45bJs0c

🚨 We’re hiring! Join our team at the Andalusian Centre for Developmental Biology (CABD, Seville 🇪🇸) as a Research Assistant / Lab Manager 🧬 Hands-on with zebrafish, CRISPR-Cas9, and molecular biology 🧪 👉 Apply / learn more: bogdanoviclab.org

If you're watching Reform-controlled Councils with their endless mishaps, resignations, fallouts, scandals, mismanagement and sheer comedic idiocy, but still thinking of making these clowns a national government, representing the UK on the global stage, you are literally insane.