
Adam Valcek, PhD
@avalcek
Postdoc - Microbial Resistance and Drug Discovery, VIB-VUB CSB, AMR, molecular microbiology, bioinformatic, beer whisperer, coffee enthusiast
ID: 1259398882800349184
10-05-2020 08:24:39
131 Tweet
251 Followers
565 Following

Very pleased to share our Plassembler manuscript with Vijini Mallawaarachchi and the twitterless Anna Sheppard for fast recovery of bacterial plasmids from hybrid sequencing datasets doi.org/10.1093/bioinf…




So Oxford Nanopore discovered something a few days ago - and it has to do with light. And they posted this image (sorry, too good not to share off the community). Yes, that’s 469% increased output. So, we decided to give it a shot and …


It's recruitment time GeneticsCambridge 🦠🧫👏🥳 !!! 3 year computational postdoc doing cool Shigella AMR genomics with me and other fun people. Read more here jobs.cam.ac.uk/job/43349/ Would appreciate RTs!


Interesse an Forschung zu Antibiotikaresistenz/One Health? Neue Stelle als PostDoc in tollem Team am Institut für medizinische Mikrobiologie und Virologie im schönen Oldenburg @UniOldenburg uol.de/stellen?stelle… #AMR jungedghm jUNITE- Netzwerk Junge Infektionsmedizin e.V. ESGNI Please RT


I wrote a new blog post with George Bouras: rrwick.github.io/2024/02/15/mis… In it, we describe a couple interesting mistakes we found in long-read bacterial genome assemblies. I think they demonstrate a few valuable lessons: (1/2)




Can we improve bacterial genome assemblies from old Nanopore runs by re-basecalling with Dorado? My benchmarking study showed that Dorado improved read quality from old runs leading to more complete genome assemblies github.com/asadprodhan/Do… Oxford Nanopore




🔈Please RT: Competitively funded PhD open to international students 🌍 Project on understanding antibiotic resistance in bacterial pathogens 🦠. At Queen's University Belfast 🎓 with myself, @ValvanoMiguel & Beckie Ingram findaphd.com/phds/project/h…

📢 Job Opportunity 📢 We are looking for a talented and driven Postdoctoral Research Fellow to join our team at Griffith University on the Gold Coast. If you're interested in advancing understanding of #Acinetobacterbaumannii capsules, see smrtr.io/mD9vc for more details!

🌞🌞🌞Job alert ‼️ We have not one but two positions available with me in Ineos Oxford Institute for Antimicrobial Research Oxford Biology. More details here: ineosoxford.ox.ac.uk/careers If you're interested, get in touch. Please share/RT #AMR


Do you have experience in bacterial genome analysis🧬? We have a 🚨3 yr postdoc position🚨! Apply to join us Quadram Institute in Norwich, UK by 13 Oct ✉️📥 Please RT! quadram.ac.uk/vacancies/rese…