ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs - Abstract - Europe PMC buff.ly/3HIIg5A

Graph theoretical Strategies in De Novo Assembling ieeexplore.ieee.org/abstract/docum…

De Novo Assembly of Linked Reads Using Supernova 2.0 link.springer.com/protocol/10.10…

A simple guide to de novo transcriptome assembly and annotation academic.oup.com/bib/advance-ar…

High-quality Arabidopsis thaliana Genome Assembly with Nanopore and HiFi Long Reads biorxiv.org/content/10.110…

Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads - Nature Biotechnology nature.com/articles/s4158…

Happy to share this happy accident and collaboration we've been working on for the last two years! In summary: We accidentally assembled a Poa pratensis reference genome. biorxiv.org/content/10.110…

The End of the Beginning of Human Genome Sequencing? Quick thoughts on today's #T2T publishing barrage omicsomics.blogspot.com/2022/03/the-en…

So proud and excited for our #T2T work on "A complete reference genome improves analysis of human genetic variation"! Im enormously grateful to the whole team for their tireless work and support Bloomberg Distinguished Professors JHU Computer Science Cell, Molecular, Developmental Biology, Biophysics science.org/doi/10.1126/sc…

NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology peerj.com/articles/13056

Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation - Nature Methods nature.com/articles/s4159…

slag: A program for seeded local assembly of genes in complex genomes onlinelibrary.wiley.com/doi/10.1111/17…

Benchmarking of long-read sequencing, assemblers and polishers for yeast genome academic.oup.com/bib/advance-ar…

HGGA: hierarchical guided genome assembler - BMC Bioinformatics bmcbioinformatics.biomedcentral.com/articles/10.11…

Does anyone have recommendations on programs for genome alignment and synteny analysis? #pacbio #genomealignment #synteny #assembly #genomeassembly The Assemblathon

Learning to Untangle Genome Assembly with Graph Convolutional Networks arxiv.org/abs/2206.00668…

Learning to Untangle Genome Assembly with Graph Convolutional Networks arxiv.org/abs/2206.00668…

Benchmarking and Assessment of Eight De Novo Genome Assemblers on Viral Next-Generation Sequencing Data, Including the SARS-CoV-2 | OMICS: A Journal of Integrative Biology liebertpub.com/doi/10.1089/om…

CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes biorxiv.org/content/10.110…

Validation of reference-assisted assembly using existing and novel Heliothine genomes - ScienceDirect buff.ly/3p2aZLk