Long-read scRNA-seq is awesome for studying RNA isoforms. But Oxford Nanopore has relied on matched short-reads to identify cell barcodes and assign reads to cells. Pleased to share BLAZE, a new tool to identify cell barcodes from nanopore scRNA-seq. Short-reads not required. 1/4

Berlin is the closest you can get to Metaverse in real life!

Interested in the mechanism of pre-mRNA splicing? Check out our latest review by @structjon in Current Opinion/Research in Structural Biology authors.elsevier.com/sd/article/S09…

We've been hard and work and just released a new alpha version of our open source basecaller Dorado! 1. State of the art speed on Nvidia GPUs and Apple M1 2. Improved accuracy 3. Multi-GPU with auto-configuration 4. Binaries available github.com/nanoporetech/d…

Colleges keep publishing their machine learning courses online. 100% free: ↓ - MIT 6.S191 Introduction to Deep Learning - DS-GA 1008 Deep Learning - UC Berkeley Full Stack Deep Learning - UC Berkeley CS 182 Deep Learning - Cornell Tech CS 5787 Applied Machine Learning

Are you interested in gene regulation of complex tissues and in RNA biology of 🧠? Ivano Legnini Group (Milan) is looking for Postdocs and Technicians! pls, retweet the🧵below: careers.humantechnopole.it/o/postdoc-legn… careers.humantechnopole.it/o/technician-s…

Machine Learning with R 🔽🔽🔽

It's my great pleasure to present the first preprint from SheqLab: a tech-dev project that we think will transform RNA biology. If you want to discover the cellular factors an RNA interacts with—practically any RNA, in nearly any context—I think you'll want to try O-MAP. (1/19)

I was really hoping to make Germany my home, but limiting the duration of the Post-doc contract to 3 years after the PhD defence without introducing options for the next step will push me and many of my fellows out of science.

Bioinformatician position available with a former Schier lab alum in Vienna imp.ac.at/career/open-po…

New preprint from our group. Q: How accurate is bulk and single-cell RNA sequencing? A: Not as accurate as we expected. In fact, at the single-cell level, PCR bias has a significant effect. We quantify this experimentally. A 🧵 biorxiv.org/content/10.110… #SingleCell

🎓 Upcoming #biocsmorgasbord! Learn "fluentGenomics: A plyranges and tximeta workflow" 🧬💻 with Mike Love Michael Love 📅 May 22-26 ➡️ buff.ly/41iwsjZ #Bioinformatics #rstats

Interested in exploring how #GenerativeAI can be used to help change the way we do #GeneTherapy? If so, please consider joining our #AI department here at ShapeTX! We have a couple of positions open seeking passionate computational innovators at the inter…lnkd.in/grXDr9DC

AG Koppstein Uniklinik Düsseldorf has an opening for a DKFZ /DKTK-supported Ph.D student in cancer bioinformatics! First round applications due July 3. Read more and apply here: jobs.dkfz.de/en/jobs/145536… #phd #bioinformatics #cancer #python #r

NGSchool2023 is your gateway to unlocking exciting opportunities in the field of computational biology. Engage with experts, expand your knowledge, and make valuable connections. Embrace the future of your career—register now! 🌍🔬 #NGSchool2023 ngschool.eu/ngschool2023/

I am happy to announce that I am seeking for a #postdoctoral bioinformatician or computer scientist for a full, #permanent_position as a research fellow in my lab! Co-maintain popular #opensource projects like #Bioconda, #Snakemake, and #Varlociraptor! koesterlab.github.io/#research-fell…

Our review of single-cell isoform work is out: tandfonline.com/doi/full/10.10… By Anoushka @CareenFoord Julien Jarroux and Shaun Pollard (not on twitter) #LongRead #RNA iRNA_COSI #nanopore #pacbio #genomics #Transcripomics #RNAseq #Splicing

1/6 📣 Postdoc and PhD positions in my lab! I’m looking for talented postdocs & PhD students passionate about gene regulation and RNA metabolism in neurons & neurodevelopment to join my group Human Technopole humantechnopole.it/en/research-gr…

Two #opportunities for bioinformatician and HPC team lead with Peter Ebert and Tobias Marschall at Uniklinik Düsseldorf! Work on human structural variation with cutting-edge technology. lnkd.in/ePDbERFs lnkd.in/eVssDdSJ #bioinformatics #python #r #hpc #linux #sysadmin

🧵Since it is becoming hard to track, here is a thread of the simply astounding weather records planet Earth has started shattering in recent weeks: 1. Dramatic flood events have begun striking various countries around the world simultaneously this week. x.com/Rishusharma26/…