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#BioInfoSummer 24 Day 1⃣: Whole cell modelling Prof. Markus Covert Stanford University Dr Megan Coomer #CellBauhaus Dr Adriana Zanca, Dr Lucy Ham, Dr Kaan Öcal, Dr Augustinas Šukys, Dr Sean Vittadello & Dr Michael Pan University of Melbourne Vini Salazar Melbourne Bioinformatics Register: bis.amsi.org.au

We are hiring a postdoctoral fellow in my group to develop innovative methods for omics data integration and be part of the mixOmics team! @melbIntGen @scimelb 2-yr opportunity, apply before Nov 3rd: lnkd.in/g6_G7VCE #unimelb #nowhiring #Statistics #omics

After an excellent #AGTA24, please save the date for #AGTA25 in Sydney October 12-15. Australasian Genomic Technologies Association AGTA

Thanks to all the industry partners for supporting #agta24 and helping make this year's meeting possible, especially Illumina, MGI and 10x Genomics. The meeting was fantastic showcase of genomic technologies in a huge variety of domains

Are you interested in sc-spatial multiomics data, motivated by improving patient outcomes in lung cancer, and keen to join a young and growing lab taking single-cell atlassing to clinical applications? Please apply :). We're looking for Postdocs! jobs.helmholtz-muenchen.de/jobposting/43b…

Day 2⃣: explore #MachineLearning & AI for #Genomics Ritambhara Singh Brown University Pengyi Yang Sydney Mathematics and Statistics Sonika Tyagi RMIT University Robert Turnbull Melbourne Data Analytics Platform (MDAP) Jiadong Mao, Sandeep Santhosh Kumar, Xiaochen Zhang MIG🦋@mig-unimelb.bsky.social Ben Goudey The Florey bis.amsi.org.au/register

Come and join us! We are looking for a bioinformatician to join the lab. Work with single cell, multiome and spatial data from model systems and human samples! Our focus is lymphatics and blood brain barrier in development, regeneration and cancer. seek.com.au/job/79558172

We present SMINT, a workflow for integrated analysis of spatial transcriptomics and metabolomics - featuring serial sectioning; immunostaining for segmentation; multi-omic registration; and unified analysis at cellular resolution. doi.org/10.1101/2024.1…

Carrying the burden of the first #ARNA2024 talk of the day, Jonathan Göke from A*STAR Genome Institute of Singapore (A*STAR GIS) rebooted our brains with a tour de force review of his inspiring work on isoform discovery, quantification, benchmarking and detection of modified bases. Also a champion of #OpenScience

Alice Cleynen from CNRS 🌍 Université de Montpellier delivered a cool presentation on establishing a metric for RNA integrity/degradation in direct RNA sequencing (rDTI) and a method to disentangle technical from biological degradation signals (INDEGRA) ⬇️ github.com/Arnaroo/INDEGRA #ARNA

If you're interested in DNA methylation, Indigenous Genomics and Precision Healthcare, we have a open postdoc position working with Sam Buckberry on epigenetic biomarker development. For more information DM me. I'll also be at ABACBS in Sydney (Nov 4-7) if you want to chat

🚨Big news! Five years in the making, our Zebrahub paper is now published in #Cell 🎉. We’ve built a timecourse atlas of zebrafish embryonic development, combining #scRNAseq data and #lightsheet live imaging, and delved deep into the dynamics of key progenitors.

Smart Energy Council’s John Grimes has roasted the “Tin Foil Hat Brigade Poppycock” LNP over their Nuclear proposal saying it’s “all about attacking Renewables & boosting Fossil Fuels.” Grimes calls out Dutton’s big list of fibs on Renewables inc his “1.4 Trillion Dollar Lie”🔥

We’re hiring! I’m looking for a bioinformatician or post-doc to work on large-scale single-cell data (>13,000 samples) to identify biological variables contributing to molecular variation. Great opportunity working with a fun, talented team Garvan Institute of Medical Research. Please RT 1/2

Thanks for the opportunity to present our SpatialBench Visium work at #ABACBS24! Happy to hear that RA's will be considered for awards too from next year 😊🙌

⁦Congratulations ⁦Jin Ng, PhD⁩ on being highly commended in the Discovery Award category at ⁦Research Australia⁩ Award ceremony 🎉🙌 ⁦Marian Burr⁩ ⁦John Curtin School of Medical Research, ANU⁩ WEHI (Walter and Eliza Hall Institute)⁩ #lungcancer #SCLC

Our new paper examining how to analyse longread RNA-seq with no reference genome. We compare approaches for assembly and downstream analysis, from transcript accuracy to differential expression. Lead by Feng Alex Yan. Thnx to all contributors incl. Quentin Gouil for the pea data!

1/: Excited to share our new study led by Luke Zappia on feature selection methods for single-cell RNA-seq data, now published Nature Methods ! We explore how choosing features impacts reference atlases & downstream analyses. 📊📚 nature.com/articles/s4159…

Part 1 and 2 of the Long-read sequencing Special Issues are now live! tinyurl.com/Genome-Res-LRS

🌏 Make your mark in Melbourne! 🌏 We are looking for innovative researchers to join WEHI as Laboratory Heads and help lead the next wave of biomedical discovery. For more information and to apply 👇 wehi.edu.au/careers/make-y…