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PhyloAcc v2 is accounting for gene tree discordance but Bayesian phylogenetic inference can be sloooow - so Gregg Thomas has coded a brilliant way to save users years of computational time #Evol2022

Next up! Gregg Thomas talking about connecting genotype to phenotype, esp in functional but noncoding regions where typical methods won’t work. Improved efficiency for new version of #PhyloAcc (in collab w/ Han Yan) may help! #greencomputing #SMBEeverywhere Society for Molecular Biology and Evolution

Amazing group and project!

Introducing degenotate, from Gregg Thomas and me: code to compute degeneracy across the genome from FASTA+GFF, and calculate MK tables from VCF+GFF. Give it a try and let us know what you think! Bug reports, ideas for enhancements especially welcome github.com/harvardinforma…

Congratulations to Clara Boothby on her flawlessly defended dissertation, "The changing trajectories of academic careers in the environments of team science." It has been a pleasure to mentor her, together with my IU Luddy colleagues yy Filippo Radicchi n.ensmenger s.milojevic

Now on bioconda! bioconda.github.io/recipes/degeno…

Our likelihood-based method for calculating site concordance factors is now out, and fully incorporated into IQ-TREE. Yu Mo Bui Quang Minh @RobLanfear academic.oup.com/bioinformatics…