Congrats to @ferencemueller and the DANIO-CODE team on their Nature Genetics paper! nature.com/articles/s4158…. Incredibly valuable resource. Underscores collaborative spirit in #zebrafish community. Maybe NIH and European Research Council (ERC) can step up for phase 2 support?

Good to see this published and glad we could provide support.

I’m proud to share my postdoctoral research in @SMBurgessLab identifying regeneration enhancers in zebrafish inner ears at single-cell resolution. 1/n

The deep learning model integrated information about enhancer activity (like ChIP-seq data, histone modification data, known motif sequences and actual vertebrate data from zebrafish DANIO-CODE. We found patterns of transcription factor binding site enrichment 8/n

📡 Big day today! Our first #singlecell RNAseq dataset is now live on #Zebrahub: 10 #zebrafish developmental stages, 40 individual embryos, ~120'000 cells. Dataset spans end-of-gastrulation to 10-day larvae. Portal: zebrahub.ds.czbiohub.org Dataset: doi.org/10.6084/m9.fig… 1/n

One week ago we released zebrahub.org the Chan Zuckerberg Biohub Network #scRNAseq dataset of zebrafish development with a very intuitive explorer. The data is open access here doi.org/10.6084/m9.fig… In this #Thread I'm going to give you a tutorial on how to use #zebrahub 👇 1/n

Fantastic talk at BCGB by Ozren Bogdanovic from Centro Andaluz de Biología del Desarrollo on DNA methylation during vertebrate development and evolution DANIO-CODE #epigenetics #embryogenesis #daniocode