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Thanks for the lovely write up @mariana_deniz in preLights summarizing our recent preprint! prelights.biologists.com/highlights/aut…

This is dope!

Amazing presentation at #AIMicroscopy Symposium: "Automatic whole cell organelle segmentation in volumetric electron microscopy" Aubrey Weigel HHMI | Janelia John Bogovic @herrsaalfeld @herrsaalfeld et al. openorganelle.janelia.org #Unet #deeplearning #microscopy

Check out COSEM and openorganelle.janelia.org

Meet Helen Farrants! Helen Farrants is a postdoc in the Eric Schreiter lab at HHMI | Janelia. She is developing bright #biosensors for imaging neuronal activity in living organisms 🧪🌈🧑🏼‍🔬 Happy #WomenScienceDay! #womenatjanelia #womeninscience 1/4

Meet Lorena Benedetti!@LorenaBenedet15 is a postdoc in the Ryan & Lippincott-Schwartz Lab at HHMI | Janelia. She studies the role of the endoplasmic reticulum at the nerve terminal 🧫🔬👩🏻‍💻 Happy #WomenScienceDay! #womenatjanelia #womeninscience 2/4

Meet Aubrey Weigel! Aubrey Weigel leads the COSEM Team at HHMI | Janelia which is developing ML approaches to automatically identify & quantify all intracellular structures in FIB-SEM datasets of mammalian cells 🔬👩🏻‍💻 Happy #WomenScienceDay! #womenatjanelia #womeninscience 3/4

Looks like I'll be spending a lot of time playing around with openorganelle.janelia.org soon! Great talk from Aubrey Weigel with such beautiful pictures (as always) at #AIM2021

Excited to share our work on ER-to-Golgi trafficking and the dynamic nano-anatomy of ER exit sites in mammalian cells! CC_Lab Aubrey Weigel (1/4) authors.elsevier.com/c/1cv4PL7PXez~G

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Sounds like a great course!

2 Papers nature on the use of enhanced FIB-SEM to image cells and tissues at up to 4nm per voxel. The authors' AI-based analysis pipeline, which they used for reconstruction of 35 organelle classes, is available via OpenOrganelle go.nature.com/3lhin4w go.nature.com/3oEsthG

It’s official! Our manuscript is out today in nature. 🥳 Additions since our preprint include a comparison of generalists trained on all training data vs specialists trained on subsets (spoiler alert: generalists win!) and #moreGolgi! rdcu.be/cy1UJ (1/3)

We’ve also gotten a facelift! 💁‍♀️ Browse all the related data for these papers and more - AND - volume renderings are now available for most segmentations. Check it out on openorganelle.janelia.org !

Still hiring for these positions at Janelia!

Check out the new feature on OpenOrganelle.janelia.org!

Come work with us at HHMI | Janelia with the new 🖌 Annotation & Analytics 📊 team tinyurl.com/5xxy2v95. This is a ✨ NEW ✨ multi-disciplinary team that will work with a variety of datasets (1/6)

Some new updates on the site, including rearranging and cleaning up the dataset pages 🪄. Also, did you know that you can open (or view) any of the datasets directly in Fiji using either File/Import/N5 or Plugins/BigDataViewer/N5 viewer? Check it out!

Last Friday Caleb Hulbert presented #Paintera at #I2K2022 . Here, showing some beautiful COSEM on openorganelle.org youtube.com/watch?v=rNJotg… github.com/saalfeldlab/pa…

Ever wanted to learn how to segment organelles in vEM? Or how we (COSEM/CellMap Project Team) generate training data for ML efforts? Look no further! You can find it all here in our recent protocol protocols.io/view/amira-ann… #teamscience #projectteams #openscience