Good news everyone! A new version of graph-tool is just out! graph-tool

graph-tool.skewed.de

graph-tool is a comprehensive and efficient Python library to work with networks, including structural, dynamical, and statistical algorithms, as well as visualization. 1/N

Landed in NY. Looking forward to lots of interesting meetings

We will be looking for new group leaders, with focus on (AI) methods, and especially young scientists. We evaluate by potential not just your current track record - great place to start a lab (speaking from experience!) - contact if interested, & please RT

Kudos to Valentina Giansanti for this and thanks to all people involved!
👇👇👇
Scalable Integration of Multiomic Single Cell Data Using Generative Adversarial Networks academic.oup.com/bioinformatics…

I’m working on applying schist to spatial data. First impressions is that using SBM (with some spatial prior) is realizing that this ain’t a butterfly or whatsoever but an ink spill instead. I hope to have some example published soon

The week ended realizing we had a wrong specification of barcode positions for DBiT AtlasXomics
Fixed that, now everything seems working. Spatial GET-seq is now a few steps afar.

Time to repost this

That time of the year when I’m sick of single cell stuff and I need some new perspective.

New lab pic? Valentina Giansanti Lillo Carlino #retreatosr2024

Sarah Marzi Davide Cittaro Kitty Murphy Janis Lisa Transfeld Paulina Urbanaviciute Joy N. Ismail, PhD UK Dementia Research Institute Imperial Department of Brain Sciences Institute of Psychiatry, Psychology & Neuroscience It's live today ➡️ bit.ly/3xQIyYf

Exciting news for the Python Single-Cell Community!
Save the date for the first scverse conference in Munich from September 10-12. Inspiring talks, interactive workshops, and networking opportunities. Stay tuned for the registrations, speaker announcements, and more! #scverse2024

So less is more? I guess the side message here is “sequence more samples, not just more cells”, which is something we should have known from the start

Today (April 2nd) marks four years since the untimely passing of James Taylor (James Taylor), Professor of Biology and Computer Science at Johns Hopkins University and one of the founders of Galaxy. To honor James, we have established the James TaylorFoundation for open-science (jxtxfoundation.org).

What a PERFFect day to share our new preprint!

With Tsion Abay #BobStickels Meril Takizawa Ronan Chaligne (He/Him) and Ansu Satpathy, we introduce PERFF-seq, a new experimental approach to studying rare cells with scRNA-seq via transcript-specific enrichment. biorxiv.org/content/10.110… 1/n

Thanks to the funding agency… oh, wait, no, I didn’t get the grant

Breaking a conda environment in 3… 2… 1…

Wanna do standard 3’, 5’ etc ⁦⁦10x Genomics⁩ applications-seq without stress? No worries! FixNCut it baby!

Laura Jiménez Gracia YOU are the best! Holger Heyn Dr. Jasmine Plummer 👩🏻‍🔬🧬🇨🇦🇺🇸 CNAG ⁦Omniscope⁩ genomebiology.biomedcentral.com/articles/10.11…

Endless forms most beautiful

Self-replicating artificial neural networks give rise to universal evolutionary dynamics | PLOS Computational Biology journals.plos.org/ploscompbiol/a…