Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile
Cryptic Prophage (phage 🧬🪤 in 🦠)

@crypticprophage

TAs 🛑 phages ('96), phages ➡️ persisters, E. c. CRISPR 🛑 cryptic prophages, indole=interkingdom signal, AI2 incr biofilm & TqsA exports (Prof. Thomas K. Wood)

ID: 1494191610225168391

linkhttps://sites.psu.edu/woodgroup/ calendar_today17-02-2022 06:07:15

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Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

Congratulations, of course. But doesn't work with bacterial non-coding RNA regulators (e.g., anti-sense Sok RNA inhibiting Hok toxin mRNA of E. coli, doi.org/10.1002/j.1460…) predate this work by at least 7 years?

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

pnas.org/doi/10.1073/pn… Important question! Agreed: slow growth = spacer labeling from high copy number of pSCRATCH. Not clear persisters labeled/related recurring infections. Method relies on IPTG addition/active protein production (for Cas proteins) but persisters are dormant.

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

nature.com/articles/s4146… Amazing to see ribosomes protected/hibernating during stress in all kingdoms (E.coli to elephants...). Here, dimers, trimers, tetramers, and pentamers in yeast tethered to to mitochondria (!) after glucose starvation.

David Bikard (@dbikard) 's Twitter Profile Photo

Vasili Hauryliuk I personally dislike the term abortive infection. Immune systems could be classified in 4 quadrants depending on whether they sense phage molecular patterns or a perturbation of host patterns, and whether they act on host molecules or act on phage molecules.

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

nature.com/articles/s4158… Never tire of the Laub group cementing the 1996 paradigm (doi: 10.1128/jb.178.7.2044-2050.1996) that toxin/antitoxin systems block phage.

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

Vasili Hauryliuk Hopefully your work will not have the word 'death' 22 times in it (without proof for prokaryotes)😉. Ah, will the 'Merchants of Death' ever stop making this unsubstantiated claim?

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

nature.com/articles/s4158… Even in single cells, persisters remain dormant with no translation. Great use of our tetracycline/rifampicin pretreat methods, which have been vetted 9 ways to ensure they create persisters. Would be nice if they mentioned the hibernized ribosome theory.

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

nature.com/articles/s4152… Beyond biofilms: Important discovery showing AI-2 regulates more than just biofilm formation. In Bacillus sp., synthesized AI-2 found to reduce sporulation by binding directly to sensor RapC, which then inhibits ComA activity to reduce sporulation.

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

pubs.acs.org/doi/full/10.10… 🙄Thru the looking glass: only in the persister field could authors claim “Eradication of P. a. persisters” but have 0.3% survival (Fig. 1be, the normal generation amount for persister studies), so they actually create persisters by stopping translation.

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

journals.asm.org/doi/10.1128/jb… Retro-research: Enjoyable read showing Las QS increases P. aeruginosa Psl transcription and Rhl QS increases Psl translation.

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

sciencedirect.com/science/articl… I'ing tripartite TAs IDed in Salmonella Gifsy-1 prophage (not called this but toxin is common HEPN protein & TAs are prevalent in prophages). No survival phenotype upon TA deletion (Fig. 1M), but less lysis from other prophages (due to slower growth?).

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

nature.com/articles/s4157… Just my opinion, based on what I consider sound research in a field with much noise due to studying dying cells, but please see the attached list of the usual errors from this lab in their Nature Rev Micro persister review.

nature.com/articles/s4157…
Just my opinion, based on what I consider sound research in a field with much noise due to studying dying cells, but please see the attached list of the usual errors from this lab in their Nature Rev Micro persister review.