Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile
Cryptic Prophage (phage 🧬🪤 in 🦠)

@crypticprophage

TAs 🛑 phages ('96), phages ➡️ persisters, E. c. CRISPR 🛑 cryptic prophages, indole=interkingdom signal, AI2 incr biofilm & TqsA exports (Prof. Thomas K. Wood)

ID: 1494191610225168391

linkhttps://sites.psu.edu/woodgroup/ calendar_today17-02-2022 06:07:15

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Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

nature.com/articles/s4158… 🧐Article is almost exclusively focused on what has been known for decades: that slow-growing cells are tolerant to stress (Abs). Nearly nothing here germane for the role of persisters reconstituting infection.

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

academic.oup.com/nar/article/53… Excellent additional proof of the regulatory nature of toxin/antitoxin modules by binding promoters other than the ones that encode the TA locus. Here, MtvT/MvtA decrease conjugation and increase virulence of P. aeruginosa.

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

doi.org/10.1016/j.cell… Chicken or egg? Looks like toxin/antitoxins were first, and a type III TA system (HEPN RNase toxin inhibited by ncRNA) evolved into CRISPR-Cas13 (RNA-degrading).

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sciencedirect.com/science/articl… 🧐106 claims of cell death ('Abi', 'PCD', 'abortosome', 'death') upon phage induction of Hailibu system (DUR4297 DNase + HerA ATPase), but extraordinarily weak data to support claims: just system fails 3 MOI but works at 100X less phage.

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academic.oup.com/nar/article/53… 😀"Reprogramming the regulatory circuits of TA operons impacts plasmid occupancy in the microbial community and provides critical targets for combating antibiotic resistance."

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

academic.oup.com/nar/article/53… Lovely work showing the expanding role of cryptic prophages in host physiology. Here, cryptic prophage rac produces transcription factor YdaT to up-regulate host biofilm-related phenotypes (e.g., EPS, colanic acid) and reduce motility.

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biorxiv.org/content/10.110… Persisters probably do allow for CRISPR adaptation, but this work has nothing to do with persisters since Fig. 1 shows cells are simply dying and never reach anything like a plateau. So another intepretation is that dying cells increase CRISPR adaptation.

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

nature.com/articles/s4156… On the basis of sex: another important link of toxin/antitoxin systems to the stress response. Here, P. aeruginosa-derived NQNO inhibits N. gonorrhoeae by increasing oxidative stress, activating Zeta1 toxin, without affecting vaginal lactobacilli.

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doi.org/10.1038/s41467… Another example of phage defense by TAs via transcription shutoff confirming the 1996 Hok/sok paradigm. This time, probable type IV ShoT/ShoA inhibits phage by altering purine metabolism via ShoT phosphoribosyltransferase activity.

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doi.org/10.1038/s44259… Mitomycin C found effective again against stationary-phase UPEC . Study builds on high-throughput screening of 10,000 pharmacological compounds for the first time (in 2019) against true persisters that identified indigoid NPIMA (DOI: 10.1002/bit.27078).

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doi.org/10.1128/ecosal… Balanced review from Ed Dudley considering whether CRISPR-Cas is active in E. coli K-12. We discovered it silences lysis transcripts from cryptic prophages in 2022 (doi 10.3390/ijms232416195).

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

science.org/doi/10.1126/sc… Yup, more evidence TAs are anti-phage systems that cause dormancy as the most-prevalent anti-phage system in chromosomal integrons.

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doi.org/10.7554/eLife.… More evidence few 'spontaneous persisters' (2004 artifact of inoculum carryover?) but persisters are primarily induced by their environment (via elegant regulation). That's why ceasing protein production can be used to make a ~100% persister population.

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sciencedirect.com/science/articl… 🧐Merchants of death: 131 (!) claims of phage inhibition of host immune systems inducing host-invoked 'death', all based on IPTG-induced promoter over-production results. Hence, 'death' here is likely not physiologically relevant.

Daniel Huelgas-Méndez 🇲🇽 (@d_huelgas) 's Twitter Profile Photo

Hello phage community! We’re looking for a T-series E. coli K-12 phage (e.g., T2, T4, T7) engineered to express a red fluorescent protein (e.g., mCherry) fused to a capsid or tail protein — to track intact virions by microscopy.

Cryptic Prophage (phage 🧬🪤 in 🦠) (@crypticprophage) 's Twitter Profile Photo

sciencedirect.com/science/articl… More proof that toxin/antitoxins are the most prevalent anti-phage system, this time in temperate phages against other temperate phages (cementing the 1996 uncited paradigm that TAs inhibit phages, doi: 10.1128/jb.178.7.2044-2050.1996).