Job opening alert! Dr. Jen Beane and Dr. Josh Campbell are seeking a postdoctoral associate - click the link for more information Boston U Chobanian & Avedisian School of Medicine Campbell Lab Joshua Campbell bumc.bu.edu/compbiomed/opp…

Excited for the publication of musicatk, an R/Bioconductor package for the analysis and visualization of mutational signatures! cancerres.aacrjournals.org/content/early/…

The lab is excited to join our collaborators in a #HumanCellAtlas Ancestry Network to characterize prostate cells from different ancestral populations funded by CZI Science. chanzuckerberg.com/science/progra…

We are excited to announce the publication for SCTK-QC, a pipeline for comprehensive QC of single-cell RNA-seq data. This pipeline will help with reprocessing and QC efforts in consortiums like #NCIHTAN. Thanks to all the hard work from my grad students! rdcu.be/cKaCj

SAIL engineers helped Junior Faculty Fellow Joshua Campbell & Steering Committee member W. Evan Johnson create a tool for comprehensive quality control analysis of single cell #RNA seq data that can be used by anyone online. Learn more on our blog: spr.ly/6013z8BZl Boston U Chobanian & Avedisian School of Medicine

Congrats to Aaron Chevalier for a successful thesis defense!

Our lab finally was able to enjoy an "in-person" lab social party which included a BBQ, hike, and a campfire with s'mores.

We are excited to join the CZI Science Data Insights program and work on novel methods and software for decontamination of single-cell data! chanzuckerberg.com/science/progra…

Our paper for celda is out at NAR Genomics & Bioinformatics! Celda performs co-clustering of genes into modules and cells into subpopulations using single-cell RNA-seq data. academic.oup.com/nargab/article…

It is exciting to see that, according to Google Scholar, our tool decontX for decontamination of single-cell data available in Bioconductor has reach 100 citations! We are happy it has been useful for the community! link.springer.com/article/10.118…

Had a great time at the CZI Science #singlecell biology meeting. Met a lot of great people, heard interesting talks, and ate great food!

Here are my 12 guidelines for data exploration and analysis with the right attitude for discovery: 1. You never really finish analyzing a dataset. You just decide to stop and move on at some point, leaving some things undiscovered. 🧵

**Speaker Spotlight** Joshua D. Campbell Twitter: Campbell Lab Website: buff.ly/3JMqyRX #BioC2023 talk will be on Interactive analysis of single-cell data using flexible workflows with SCTK2.0 Schedule: buff.ly/3O1mjVq Registration : buff.ly/3nKEq72

Excited to announce that the last chapter of my PhD thesis has been published! Do I get a bonus for 100% completion? Thanks to Ana Pavel for help getting this across the finish line. Potential roles for miRNAs in COPD and ILD using integrative networks rdcu.be/djf3Q

Natasha Gurevich represented our group well at the NCI ITCR annual meeting 2023! She is presenting a novel benchmarking framework for mutational signature algorithms.

Our publication on how to decontaminate CITE-seq data with DecontPro is out in NAR! Congrats to Yuan Yin for leading a great piece of work! academic.oup.com/nar/advance-ar…

Excited to publish our collaborative work defining a new standard called "MAMS", which will aid in harmonization and reproducibility of single cell data. genomebiology.biomedcentral.com/articles/10.11…

Recommendations for how to study premalignancy going forward. My contribution was focused on the "organizing principles" of cancer hallmarks. nature.com/articles/s4156…

Had a blast tackling the biggest corn maze in New England for our lab fall social!

Congrats to Amulya and Charley for their wins at BUMC Evans Day for their talks and posters!