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There is a new Silva reference for taxonomic assignment in DADA2. Key improvements: (1) More complete coverage of Bacteria and Archaea, (2) Species-level designations (and thus species-level assignments) are now available. zenodo.org/record/3986799

Morning ! Nanjing!

On the way from Nanjing to Beijing!

It’s crowded every time have lunch. Today is “five grain rice noodles”

Delicious!

Add significant test.

#RStats users trying to set up python

Could someone answer my question?when analyzing the microbes in the three compartments of plant roots: rhizosphere, rhizoplane and bulk soil. Should the soil properties of rhizoplane be measured separately? I now have the physicochemical properties of rhizosphere and bulk soil.

Have archaea been reclassified? In the new silva database, Thaumarchaeota disappeared.

Zhenghong Wang, Yi Song. 2022. Toward understanding the genetic bases underlying plant-mediated “cry for help” to the microbiota. iMeta 1: e8. doi.org/10.1002/imt2.8 youtu.be/2SpuXF16LT0

Today got article-Rhizosphere bacteriome structure and functions. K-strategies and r-strategies, who dominate? Microbial formation-network -functions. Interesting article.

"Plant domestication shapes rhizopshere microbiome assembly and metabolic functions" -- Cool article comparing wild and domesticated wheat genotypes! microbiomejournal.biomedcentral.com/articles/10.11…

Happy to share our new paper🥳 itol.toolkit accelerates working with iTOL (Interactive Tree Of Life) by an automated generation of annotation files 📖link: academic.oup.com/bioinformatics… 🖥️code: github.com/TongZhou2017/i… 📊gallery: tongzhou2017.github.io/itol.toolkit-g…

🚨 You're into microbes, metagenomics, metatranscriptomics and environmental niches ? I'm so pleased to share my latest paper in Trends in Ecology & Evolution - Into the Microbial Niche - EcoSpat group Have a read, it's open access too! 👇 cell.com/trends/ecology…

iMeta | Patterns and drivers of microbiome in different rock surface soil under the volcanic extreme environment doi.org/10.1002/imt2.1… youtu.be/kSTu5mzlwQQ

Welcome to read the ISME paper -Conversion of steppe to cropland increases spatial heterogeneity of soil functional genes nature.com/articles/s4139…