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Quantitative microbial taxonomy across particle size, depth, and oxygen concentration frontiersin.org/journals/micro…

Introducing Comamonas thiooxidans sp. nov, a newly discovered sulfur-oxidizing bacterium isolated from a sulfur spring in Athmallik, Odisha, and sequenced by BRIC-Institute of Life Sciences. This microbe contributed to sulfur cycling and showcased microbial adaptability in specialized environments

Terminal Genome Viewer (tgv), written in Rust github.com/zeqianli/tgv

The ISME ECSC is glad to spotlight Arthur Cousson from the UMR Eco&Sols - IRD Montpellier, and his paper "NanoASV: a snakemake workflow for reproducible field-based Nanopore full length 16S Metabarcoding amplicon data analysis" doi.org/10.1093/bioinf… (1/2)

Unlocking antimicrobial resistance with multiomics and machine learning dlvr.it/TL1PLD

New metagenome assembler for @Nanopore R10 and PacBio HiFi reads from Jim Shaw

‼️Last days to register‼️ Don't miss this opportunity: Hands-on EMBO course in #genome sequencing, assembly, curation, and downstream analyses: 08 –12 Sep 2025 in #Florence Italy ☀️ DEADLINE: 31/05! 🔗 meetings.embo.org/event/25-genom… #EMBOgenomeSeq #assembly #bioinformatics

Benchmarking and optimizing qualitative and quantitative pipelines in environmental metatranscriptomics using mixture controlling experiments | ISME Communications | Oxford Academic academic.oup.com/ismecommun/adv…

Journal of Open Source Software: GraphBin-Tk: assembly graph-based metagenomic binning toolkit joss.theoj.org/papers/10.2110…

🎉Our latest paper is out in npj Systems Biology and Applications! We present COSMOS–a computational tool to predict optimal microbial monocultures & co-cultures for specific environments Read more🔗nature.com/articles/s4154… 👏 Kudos to Lavanya Raajaraam for leading this work!

PICRUSt2-SC: an update to the reference database used for functional prediction within PICRUSt2 academic.oup.com/bioinformatics…

10 tools to make a better flowchart than in PPT 🧵

Missed one of the latest #ERGA BioGenome #Analysis and #Applications seminars? Catch up on all sessions on the ERGA YouTube Channel! 📽️ youtube.com/playlist?list=… Topics include #Phylogenomics, #FunctionalGenomics, #PopulationGenomics, and #ComparativeGenomics.

Pairwise graph edit distance characterizes the impact of the construction method on pangenome graphs. #PangenomeGraphs #Bioinformatics academic.oup.com/bioinformatics…

CMplot -A high-quality drawing tool designed for Manhattan plot of genomic analysis github.com/YinLiLin/CMplot

90% of doing science is being open to new ideas.

Integration of metatranscriptomics data improves the predictive capacity of microbial community metabolic models academic.oup.com/ismej/advance-…

KSGP 3.1: improved taxonomic annotation of Archaea communities using LotuS2, the Genome Taxonomy Database and RNAseq data | ISME Communications | Oxford Academic academic.oup.com/ismecommun/adv…

🌊 Sea Level Rise & Coastal Inundation Mapping in Google Earth Engine Tutorial Link: youtu.be/n0GvChUbLUc Watch the full video on YouTube and learn how GEE can be a powerful tool for climate risk assessment and coastal resilience planning. #SeaLevelRise #GoogleEarthEngine

BakRep – a searchable large-scale web repository for bacterial genomes, characterizations and metadata microbiologyresearch.org/content/journa… 🧬🖥️ Nextflow code: github.com/ag-computation…