Very interesting collage of friends put up there.

Here is our preprint “Minimizer-space de Bruijn graphs”, that will be presented at RECOMB ’21

A recent paper with Ilan Shomorony on doing a rate-distortion analysis of min-hashing. We were a bit surprised it had not been done till now. arxiv.org/abs/2107.04202

New paper with Govinda Kamath on how to look at sketching and min-hashes from a rate-distortion perspective!

Very surprising data!!

We’re excited to release DeepConsensus, a transformer approach for PacBio HiFi consensus generation. DeepConsensus reduces HiFi read errors by 42%, improving assembly NG50, base accuracy, as well as variant calling. Led by Gunjan Baid and Daniel Cook ∛ biorxiv.org/content/10.110…

This Indian team has been able to win in England and Australia despite absolutely lackadaisical batting. We're not elegant but we win.

This has to be the most garbage South African team since 1992. They have no batsman averaging more than 40 and their bowling seems absolutely toothless.

Spatially Aware Dimension Reduction for Spatial Transcriptomics biorxiv.org/cgi/content/sh… #bioRxiv

Yet another genome assembler, this time it is written in Rust. Peregrine-2021: A faster and minimum genome assembler for long-reads with good enough accuracy github.com/cschin/peregri… #genomics #bioinformatics #rustlang

My favourite bowler of all time. And my favourite commentator in recent times. ॐ शान्ति!!

Meanwhile, the single cell field

High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue biorxiv.org/cgi/content/sh… #bioRxiv

Stoked to see the software I worked on during my PhD run on 4,000+ human genome samples - big thanks to my co-authors (and especially Bo Zhou) for leading the charge biorxiv.org/content/10.110… Methodologically, I especially like the coming together of bioinformatics algos, [1/2]

ntsm: an alignment-free, ultra low coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap ... biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

📢 New Feature Alert 🎉 The beta version of Automated Cell Annotation is live in Cloud Analysis! Reduce the burden of manual annotation & visualize cell types instantly to get more accurate #singlecell insights faster. Try it now: bit.ly/3XVOdHe