
AMICI
@amici_toolbox
AMICI is Python/C++/ Matlab interface for SUNDIALS solvers that enables scalable sensitivity analysis for ODE models. github.com/AMICI-dev/AMICI
ID: 1100857328180649990
https://github.com/AMICI-dev/AMICI 27-02-2019 20:36:54
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AMICI 0.11.8 is out, including improved SBML support, better documentation and various bug fixes: github.com/AMICI-dev/AMIC… Contributions by Daniel Weindl, Dilan Pathirana and @fabfrohlich

AMICI 0.11.9 is out, again with improvements to SBML supporta and small bugfixes: github.com/AMICI-dev/AMIC… Includes contributions by Paul Stapor, Daniel Weindl, @fabfrohlich, Dilan Pathirana, Thomas Ligon and Lorenzo Contento.

AMICI 0.11.11 is out, again with better SBML support and bugfixes. Notably we have significantly improved sensitivity computation for models containing Piecewise functions: github.com/AMICI-dev/AMIC… Includes contributions by Paul Stapor, Daniel Weindl, @fabfrohlich and Dilan Pathirana.

AMICI 0.11.13 is out, bringing better handling of state reinitializations, improved documentation as well as several bugfixes: github.com/AMICI-dev/AMIC… Includes contributions by Daniel Weindl, @fabfrohlich and Dilan Pathirana.

AMICI 0.11.14 is out, adding support for events and various bugfixes: github.com/AMICI-dev/AMIC…… Thanks to Daniel Weindl, Dilan Pathirana, @fabfrohlich, Yannik Schälte and Paul Stapor for contributions

The application note describing AMICI is now published in Oxford Bioinformatics: doi.org/10.1093/bioinf… Thanks to @fabfrohlich Daniel Weindl Yannik Schälte Dilan Pathirana Paul Stapor and Jan Hasenauer for contributions.


AMICI 0.16.0 is out with many improvements to documentation and QoL features github.com/AMICI-dev/AMIC… Thanks to @fabfrohlich and Daniel Weindl for contributions!

AMICI 0.16.1 is out bringing many smaller fixes, cosmetic improvements, and documentation updates: github.com/AMICI-dev/AMIC… Thanks to Daniel Weindl, @fabfrohlich and polina.lakrisenko for contributions!

AMICI 0.17.0 is out with SBML plugin and AlgebraicRule support and lots of other goodies: github.com/AMICI-dev/AMIC…. Thanks to Daniel Weindl, @fabfrohlich, Dilan Pathirana, polina.lakrisenko and Henrik Podéus for contributions!

AMICI 0.23.0 is out with many bug fixes and QOL improvements: github.com/AMICI-dev/AMIC…. Thanks to Daniel Weindl, @fabfrohlich, polina.lakrisenko and Paul Jonas Jost for contributions!