Excited to share Trackastra, our new study on generalizable data-driven cell tracking. We use a lean transformer to learn costs for linking up segmented cells into lineages. - Preprint: arxiv.org/abs/2405.15700 - Napari plugin with first pretrained models: github.com/weigertlab/nap…

Another year, another #BIC Workshop! This year at European Conference on Computer Vision #ECCV2026 2024 in Milan, 🇮🇹. Check it out here: bioimagecomputing.com Submission Deadline: July 19th  Get your computational work out, we are looking forward to meet you in October! 🍕 🍷 👩‍🎓 👨‍🎓 ☀️

We present: 'Multispectral live-cell imaging with uncompromised spatiotemporal resolution'. biorxiv.org/content/10.110… 1/16

Happy to share our group's work together with Albert Dominguez Mantes on DL-based spot detection and cell tracking today at the great Swiss BioImage Analysts' Society meeting SwissBIAS, so many cool projects around!

Just accepted at ECCV 24 🎉🎉 big congrats to Ben Gallusser ! Milano in autumn it is then...

Interested in navigating #metabolism in space and time? Meet uMAIA (the Unified Mass Imaging Analyzer) - a framework developed in collaboration with Giovanni D'Angelo & oaties EPFL Life Sciences led by Halima Hannah Schede & Leila #omics #lipidtime #MALDI biorxiv.org/content/10.110… 1/N

🚨OPEN PhD position🚨 I am looking for a highly motivated PhD student to join my project group in the Department of Machine Learning and Systems Biology MLSB led by Karsten Borgwardt at Max Planck Institute of Biochemistry (MPIB) near Munich. Deadline November 15th. Please RT.

Get to know Spotiflow, an AI method that improves large-scale transcript localization by combining deep learning with a novel geometric detection approach. Learn more: 👉 scads.ai/transcript-det… Find the publication in Nature Methods: 👉 nature.com/articles/s4159…

A nice advance for imaging-based spatially resolved transcriptomics from the Weigert and La Manno labs. Spotiflow uses deep learning for subpixel-accurate spot detection in diverse 2D and 3D images. nature.com/articles/s4159…

🧬🔬 Millions of molecules automatically detected in human tissues thanks to Spotiflow, a revolutionary AI-powered microscopy tool developed at EPFL and TU Dresden 👇 📍Supported by EPFL Center for Imaging 🔗actu.epfl.ch/news/in-the-bl… #AI #Microscopy #SpatialBiology #OpenScience #EPFL