Excited to share our work Jean Yang Computational Systems Biology Lab SimBench Nature Communications, that evaluates #SingleCell simulation methods. doi.org/10.1038/s41467…

My final project of my PhD is out in @NatureComputSci!! rdcu.be/cDyVT #singlecell #cellularidentity #markergenes #differentialstability #Cepo see thread 🧵

Very excited to share my first first-author paper in @OUPBioinfo !! academic.oup.com/bioinformatics… Please see thread. #SPS #phosphoproteome #splicesome #cancermutation

Very excited that our latest work scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning is finally out Nature Biotechnology! go.nature.com/3FNNIm6 It is a joint work and a great collaboration between Wong Lab Stanford University and Sydney Precision Data Science Centre

How well do “mini-organs” in a dish recapitulate the human tissue? We set out to answer this question for the human eye, a super fascinating organ! I'm excited to share our preprint on bioRxiv. Check out the full story through the link! 🧵biorxiv.org/content/10.110…

My first preprint is out on bioRxiv!✨ The identification of genes that vary across spatial domains in tissues/cells is an essential step in spatial transcriptomics data analysis. Given this, we evaluate the performance of various proposed SVG methods. biorxiv.org/content/10.110…

K-Means Clustering xkcd.com/2731

Sorry, I'm late. A new paper of clustering multimodal single cell data is posted at bioRxiv. A huge thanks to chunlei liu and my amazing supervisor Computational Systems Biology Lab and Jean Yang for the their support and guidance over the course of this project.

Super congrats to Wendy 🎉

Excited to share our latest publication in single-cell clustering! Check out our paper on "Ensemble deep learning of embeddings for clustering multimodal single-cell omics data" (Now Published!) at doi.org/10.1093/bioinf…

Remember this habitual offender of racial discrimination. Shame of Massachusetts Institute of Technology (MIT) 🙃 Hallucination is not a problem of AI, it’s a problem of this group of humans, no? Once we eliminate their corpus from the training set we might solve the hallucination problem:)

Someone confronted on the spot, and they said “ Maybe there is one, maybe they are common, who knows what. I hope it was an outlier.” Even this explanation is full of implicit racial bias. See the full conv: dropbox.com/scl/fi/2dtji0z…

I'm shocked to see racism happening in academia again, at the best AI conference NeurIPS Conference. Targeting specific ethnic groups to describe misconduct is inappropriate and unacceptable. NeurIPS Conference must take a stand. We call on Rosalind Picard Massachusetts Institute of Technology (MIT) MIT Media Lab to retract and