I’ve collected several (currently 13) of the Jupyter notebooks I put together for teaching Cheminformatics in a Git repo and made them runnable on Google Colab. Hopefully, others will find the notebooks useful for teaching or self-study. github.com/PatWalters/pra…

Check out my first, first-author work on predicting protein complex function using word embeddings! Published in Briefings in Bioinformatics. A huge thank you to my coauthors and mentors who supported me through this work! Chen Li Matteo Manica academic.oup.com/bib/advance-ar…

Really great work using in vivo perturb-seq led by David Lara-Astiaso & Ainhoa Goñi-Salaverri with great mentoring by Brian Huntly lab (Cambridge Stem Cell Institute, Wellcome) & Nikolaus Fortelny - not to mention many others and couple at Relation helped along the way ;) #singlecell

Everything #CRISPR & #singlecell for #machinelearning all in one place - scperturb.org Favourite takeaway figures attached: compare data size & quality before benchmarking - PLUS - how everything ties together! CC Nils Blüthgen CompCancer Chris Sander aka cscbio Debora Marks

We are also recruiting a Postdoc or Junior Group Leader: “Machine Learning in [Bio]Medicine” (possibly with tenure-track option) for the Institute of Artificial Intelligence at the Medical University of Vienna (MedUni Wien). Details: nature.com/naturecareers/…. #AI #ML #biomedicine

Updated RECOVER manuscript out, 2 key updates: 1.) More experiments: 5 rounds of Active Learning guided experimentations 2.) Analysis of learnt embeddings: co-embedding of structure with biological mechanism. arxiv.org/abs/2202.04202

Trajectory planning with 800 million neurons.

If you're a professor or a student in STEM in a Western country, you probably know someone from the Sharif University of Technology in Iran. They might have be your students, peers, or friends. That university is now under attack by the Islamic Republic. 🧵(1/16) #MahsaAmini

Behold one of the mightiest tools in mathematics: the camel principle. I am dead serious. Deep down, this tiny rule is the cog in many methods. Ones that you use every day. Here is what it is, how it works, and why it is essential.

It was an honor to welcome Austrian Academy of Sciences President Heinz Faßmann! #CeMM Directors guided him through our building, where he met some of our scientists & learned more about our research work 🔬 We thank President Faßmann for his visit & interest in CeMM!

Introducing TAP-Vid, a new benchmark for tracking points on physical surfaces in videos. To gain physical understanding, AI must perceive how objects can move, including rotation and shape change. But there hasn't been a way to evaluate it - until now: dpmd.ai/tap-vid

We are recruiting PhD students in cancer and immunology, combining wet-lab biology with high-throughput technology, bioinformatics & machine learning. Goal: Biological discovery & advancing medicine. Approach: Interdisciplinary & collaborative. Apply here: cemm.at/phd-program

Simulation can guide biology & medicine. But biology is often too complex to capture it in equations. Can ML/AI enable qualitative simulation, combining knowledge and reasoning across scales? We built a GPT-4 powered text-based biomedical simulator: biorxiv.org/content/10.110… [1/7]

Very happy to share that this work got accepted to #NeurIPS2023 as a spotlight 🥳 It's my personal first ever acceptance at NeurIPS - and got an additional poster as cherry on top!

Check out our first Episode "WTH is Mechanobiology?" where we find out what other fields know about the subject and discover opportunities for bioengineers to integrate their talents, perhaps some inspiration for new project ideas! podcasters.spotify.com/pod/show/ditar…

Check out our 2nd BioEngineering_Talk "Authorship". What does it mean to be an author on a paper? How should your work be evaluated? Does this reflect your position on a paper? for all young scientists about to publish, tune in and hear us discuss authorship. spotifyanchor-web.app.link/e/4YkLYDq5EHb

Our 3rd BioEngineering_Talk is dedicated to "Women in STEM". Hear about the inspirations, hurdles and aspirations of a fantastic group of Women in STEM. Tune in to listen to their views about the future of science and the advice they give to the new generation. spotifyanchor-web.app.link/e/qLxnJwc6EHb

Today we are "Starting a Lab" 🥼 and we're so excited to host Adrian Ranga to tell us how. Adrian takes us through his journey into academia. Starting/joining a lab? tune in to hear about critical decision-making, pitfalls, and where the field is heading! spotifyanchor-web.app.link/e/FSuoKFT6HIb

🗨️ WANNA TALK TO YOUR CELLS? Try out CellWhisperer – our new multimodal AI that turns single-cell RNA-seq analysis into a conversation. No coding needed, just chat in plain English. Short walkthrough below. Web app & bioRxiv preprint linked in the thread. Let's dive in! (1/9)

Our latest scTrends.org article is now in Cell Genomics: cell.com/cell-genomics/… Paired with this is our end of year round up: sctrends.org/p/end-of-year-… Get in touch if you want to be involved!