New OA Resource: "A single-cell, spatial transcriptomic atlas of the Arabidopsis life cycle" rdcu.be/eBmkU An extensive single-nucleus and spatial transcriptomic atlas of the Arabidopsis life cycle that represents 10 developmental time points in 6 diverse organs.

Tremendous work by the extremely talented postdocs! Travis Lee Natanella Illouz-Eliaz 🎗️ Tatsuya Nobori .Thank you for putting in a major effort on this “side project” to develop a power community resource arabidopsisdevatlas.salk.edu

From a gene’s single cell expression – through spatial localization – to novel function, and beyond! A new resource now out Nature Plants Explore the paper here: nature.com/articles/s4147…

Thanks for the enthusiasm in using our online web browser! Due to the high traffic, we have allocated additional resources for user access, so if anyone encountered a bug with accessing the data, please give it a try again and reach out if additional errors are encountered!

snm3C-seq has now been applied to human adipose tissue! In collaboration with the Pajukanta lab David Geffen School of Medicine at UCLA and Zeyuan (Johnson) Chen nature.com/articles/s4158…

Please share! Proud of the first publication from ROOT & SHOOT Research Coordination Network. Three years work from a huge team of volunteers. We crafted aspirational community agreements, accessibility guides & conference recommendations, tested many and report on our outcomes. elifesciences.org/articles/106877

Big news! World-renowned plant biologist Lucia Strader, previously at Duke University, will join the Salk faculty this October. 🌿 Strader’s work will advance our understanding of plant growth signaling and help Salk’s Harnessing Plants Initiative design more resilient crops

Our new Nature Plants paper is out (and we’re on the cover)!👉 bit.ly/4lS8sOB By combining scRNA-seq with conserved TF binding (multiDAP) we define gene regulatory networks for 65 cell types across 4 tissues in a wide range of flowering plants!

Nearly everything you know about plants was first discovered in a plant you’ve likely never heard of: Arabidopsis thaliana. Arabidopsis has taught us how plants respond to light, which hormones control plant behavior, and why some plants grow long, deep roots while others grow

Our paper identifying evidence of off-target probe binding in the 10x Genomics Xenium Breast Gene Panel is now available as a reviewed preprint at #eLife elifesciences.org/reviewed-prepr… We look forward to revising the paper to incorporate reviewer recommendations and other updates 🧵👇

Our #research on #drought #recovery, now published with Springer Nature in Nature Communications: Drought recovery in plants triggers a cell-state-specific immune activation. Read thread below 👇 doi.org/10.1038/s41467…

A timely article as several recent conference discussions have led to similar thoughts nature.com/articles/s4158…

Our new preprint, led by Max Moonier and Luke Thomas, on CRISPR barcoding + eDNA for multigenerational coral tracking (finally I get to work on corals! 🪸) biorxiv.org/content/10.110…

It was a busy summer at the Alonso-Stepanova Lab with four manuscripts now published. Pathy, Mario, and Anna's EBSn ethylene reporter paper is now available in the Plant Biotechnology Journal. onlinelibrary.wiley.com/doi/10.1111/pb…

How do plants regenerate after wounding? Our new work shows that HSFA1 transcription factors are among the earliest wound-activated regulators of cellular reprogramming in plants! 🌱 🌱 🌱

🧵1/ Excited to share our new paper: "Brain Region-Specific Epigenomic Reorganization and Altered Cell States in Alzheimer’s Disease" We built a single-cell multi-omic atlas (DNA methylation + 3D genome) from AD and control brains. Paper: biorxiv.org/content/10.110…