A very intriguing result in the new Y chromosome paper, one that you might miss unless you read the paper closely... 1/6 nature.com/articles/s4158…

Have a good day folks. Today I was wondering: are #bioinformaticians engaged in the htmx.org / Octoporse / Horsetopus (same thing) framework hate/love/laser debate?

Also this year, we had the opportunity to share some #SeqFu stickers at #EBAME8 with @EvelienAdri, Hannah Pye and andrea telatin. Every single sticker is honoured...

A new #SeqFu release directly from the Gambia! Bugfix, slight improvement to fu-orf (1.20.1) And moved the building stack to nim 2.0 Unfortunately, bioconda recipe won't work on macOS for the latest version... you can get up to 1.20 on mac until this gets fixed

Thanks for the GitHub stars, I just realise they are slowly growing. Can we hit the 128 🌟 (2^7)? Thanks :)

Have a nice weekend, folks! Keep your #HPC clusters busy over the weekend with your #bioinformatics analyses 🙃

Hey #Miniconda users, `conda-libmamaba-solver` is default solver since 23.10, so stop installing mamba (Or use #micromamba straight away! 😜)

Thanks! >1_1 frame=+0 start=0 tot=3 MERRYCHRISTMASANDAHAPPYNEWYEAR with SeqFu ORF telatin.github.io/seqfu2/utiliti…

Metagenome taxonomy profilers usually ignore unknown species. SingleM is an accurate profiler which doesn't, even detecting phyla with no MAGs. We applied it to 250,000 metagenomes- in environmental samples 75% lack a genome/MAG (abundance-weighted). A 🧵biorxiv.org/content/10.110…

🥖 Freshly baked: Fasten by Lee Katz @[email protected] was just published in JOSS. Of course, it's a fast FASTQ manipulation toolkit, written in Rust. UNIX pipes provided. Bring your own dataset :)

Complain all you want about peer review Frontiers, but its current manifestation is the logical extension of a toxic, dysfunctional and irrational publishing culture that treats papers as currency and continues to propagate the lie that "peer reviewed" means "valid".

Microsoft wants to buy us, but then they would make `SeqFu (work or school)` and `SeqFu (new)` available through their app store...

Did you know that fu-index allows you to extract lane and run information from Illumina datasets? This can be useful when splitying by run (e.g. when running DADA2 or prevent batch effect) telatin.github.io/seqfu2/utiliti…

We got 100 stars, thanks a million! github.com/telatin/seqfu2

SeqKit 2 is now described in a new paper! It's great to see this great program growing. Inspiring! onlinelibrary.wiley.com/doi/full/10.10…

What if SeqFu had an #Anvio shortcut? You could reformat FASTA file 50X faster

SeqFu 1.22.0 is out, with some minor improvements and updates. It's codenamed #EBAME9 because it features a new `--anvio` mode in "seqfu cat" github.com/telatin/seqfu2…