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By effective and efficient integration of PacBio HiFi, ONT ultra-long and other sequencing data types, hifiasm (UL) enables telomere-to-telomere diploid and polyploid genome assembly at population-scale. Haoyu Cheng Heng Li nature.com/articles/s4159…

Nature Podcast: AI protein predictor AlphaFold gets an upgrade go.nature.com/4bosfRi

Comparative Genome Viewer: whole-genome eukaryotic alignments journals.plos.org/plosbiology/ar…

I still try to keep rhettrautsaw.app/shiny/BiologyP… up-to-date. Did your US-based EEB or Biology department (that is part of this database) raise their PhD Stipend this year? Let us know: forms.gle/Go5zHU4Zgv2Q1z…

DeepDive: estimating global biodiversity patterns through time using deep learning nature.com/articles/s4146…

A paper in Nature Methods presents OpenFold, which is a trainable open-source implementation of AlphaFold2. go.nature.com/3QOpII2

DECODING GENOMES - from sequences to phylodynamics: We are proud to present our book on how to analyse genomic sequences with an evolutionary perspective. See decodinggenomes.org for a free pdf, Amazon links for print orders, and further information. Great team effort 1/2

Matreex: Compact and Interactive Visualization for Scalable Studies of Large Gene Families buff.ly/4eiFR2x #science #evolution #biology #genome

A new PNAS paper, by Maeda lab UW–Madison and Yoshikuni lab Berkeley Lab, revealed the evolutionary history of aminotransferase family enzymes, crucial for nitrogen metabolism, across the Tree of Life. Thanks to DOE Genomic Sci and NSF PGRP for support! tinyurl.com/yvn4wkju

We received over 1000 applications for 3 PhD positions (I know!🤯) Since not too long ago, I was on the other side of the table... I want to share 3 basic general tips for those applying for PhD positions and postdocs! 🧵

Excited to see the first chapter of my masters thesis out in BioOne and Journal of Herpetology! If you are interested in some garter snake dietary records or to see how their body evolved/didn't evolve with dietary specialization, this one is for you! bioone.org/journals/journ…

Excited to share our new paper in #APPS and software on predicting ploidal level from sequence data! Paper: doi.org/10.1002/aps3.1… Software: mlgaynor.com/nQuack/ (1/n)

UTEP is offering a tenure-track, assistant professor position for a wildlife biologist. Mammalogists are especially welcome to apply: utep.interviewexchange.com/jobofferdetail…

UTEP is offering a tenure-track, assistant professor position for a Quantitative Community Ecologist: utep.interviewexchange.com/jobofferdetail…

If you know of anyone interested in macroevolution and spatial patterns of biodiversity, I am seeking new PhD students to apply this fall! Please reach out if you would like to chat! pascaltitle.com

We are hosting an MEE live! Join Michela Leonardi to find out more about the R package tidysdm 📆 24th October 15:00pm BST You can find more information and register here👇 britishecologicalsociety.org/event/mee-live…

Excited to share my first, first-author paper exploring genomics and venom variation of the Red Diamond Rattlesnake across the Baja California region. academic.oup.com/gbe/advance-ar… GBE (Genome Biology and Evolution) Rʜᴇᴛᴛ M. Rᴀᴜᴛsᴀᴡ 🐍 Cameron Ramses Rosales Marc A Beer @SSSTING_Lab paul frandsen

In the latest issue! Evolution and genetic adaptation of fishes to the deep sea dlvr.it/TJQYbx