Excited to present our effort to bring single-cell (SC) omics one step closer to guide therapy in clinics. We present a scRNA-seq based precision oncology framework and demonstrate its application in 3 cancer patient cohorts. A 🧵 of Key takeaways. biorxiv.org/content/10.110… 1/13

I wrote another book review! On Christine Kenneally 's 2014 book all about everything genealogy! A fun and in depth look at the history of genealogy and where it could go in the future 🧬 #Genealogy #BookReview robertadavidson.substack.com/p/book-review-…

A student thought I was doing something special to make UMAPs look nice (I tinker with the parameters). In this blog post, I explore how different UMAP parameters can influence #dataviz with #singlecell #spatiallytranscriptomics: jef.works/blog/2022/01/1… #RStats #Bioinformatics

Our new review has recently been published! doi.org/10.3389/fmolb.… Covering the current state of single-cell omics & imaging technologies, & computational methods to perform integrative analyses of these datatypes to discover new insights, with case-studies from #aging

New Huberman Lab Podcast Out Now: USING PLAY TO REWIRE & IMPROVE YOUR BRAIN • Enhance Task Switching • Increase Creativity, Role Expansion • Offsetting Trauma, ADHD • Extend the Neuroplasticity Window • Science & Tools for Kids & Adults hubermanlab.com/using-play-to-…

Women in Bioinformatics Australia @_holly_martin_ Alicia Oshlack @sexchrlab Jessica Mar Nicola Armstrong Dr Melanie Smith Nhi Hin Pei Qin Sabrina Chelsea Matthews (as well as many others not on twitter!)

Come and join us on Tues 22nd 5.00pm CET to hear Fabian Theis talk about his recent work on #visualisation of #SpatialOmics data. Paper: nature.com/articles/s4159…. #BioVisMeetup

Big congrats to my little brother davidhin for getting his first, first-author paper out!

For everyone that's ever recommended I read Sapiens by Yuval Noah Harari, I didn't love it. Read why in my substack book review 👇 robertadavidson.substack.com/p/book-review-…

We (South Australian Genomics Centre (SAGC) ) are preparing to recruit for 3 #bioinformatics positions: • 1 can be more junior • 1 can be more senior • 1 to be a specialist in spatial transcriptomics Please get in touch if you are interested and want to find out more! #jobs #adelaide #australia

My package sSNAPPY for Single Sample directioNAl Pathway Perturbation analYsis in RNA-seq data was released with Bioconductor 3.15 yesterday!bioconductor.org/packages/relea… This is my first time developing a package and it has been an amazing learning experience!

Massive congrats to one of my most admired colleagues and friends, Dr Karissa Karissa Barthelson for graduating! 😍 I still remember going to conferences together as part of #LardelliLab. I am so happy that we will both be working in the field of neurodegeneration going forwards. ❤️

The ABACBS 2022 conference is back in Melbourne (and virtual). As usual, we’re planning one amazing week of bioinformatics with the COMBINE symposium, amazing ABACBS conference, workshops, Cancer Bioinformatics Australia and BioCAsia. When? November 28-Dec 2 2022

More evidence that aerobic exercise improves brain aging. People with higher cardiorespiratory fitness (a marker of physical fitness) had a higher total brain volume, gray matter volume, and higher clusters of gray matter associated with cognition. sciencedaily.com/releases/2020/…

I have created pharokka, a dedicated fast phage annotation tool inspired by prokka. Pharokka is designed for users who want one-line, rapid, standarised and scalable phage annotations, much like prokka for prokaryotes. github.com/gbouras13/phar…

It’s wonderful to see the bioinformatics community growing in Adelaide. Thanks COMBINE, Nora Wenjun Liu and Nandini Sandran for organising!

Schematic of circuits and functions of the human brain. We still need to know more. #neuroscience #NeuroTwitter #Bioinformatics #MedTwitter #brain #Science #sciencetwitter

Finally designed a logo for my #Bioconductor package sSNAPPY(bioconductor.org/packages/relea…), a pathway perturbation testing method! Idea came from a key function that visualises significantly perturbed biological pathways as a network, where node colors reflect directions of change.

✨ Here's how to generate A.I. images with Stable Diffusion on your MacBook M1/M2 in less than 30 seconds for free: - Upgrade MacOS to the latest version (top left 🍎 -> About This Mac -> Software Update - Open Terminal app - Install Homebrew from brew.sh 👇 1/n