I am really happy and excited to see CellRank 2 out in Nature Methods (nature.com/articles/s4159…)! Nature Methods Helmholtz Munich | @HelmholtzMunich Computational Health Center TU München Marius Lange Fabian Theis dana_peer (1/16)

Philipp Weiler Nature Methods Helmholtz Munich | @HelmholtzMunich Computational Health Center TU München Marius Lange Fabian Theis dana_peer Congratulations Philipp! Great to see you gave a nice talk on this work at the conference!

CellRank 2 is a comprehensive framework for cell fate analysis using large-scale multiview single-cell data. Philipp Weiler Marius Lange dana_peer Fabian Theis nature.com/articles/s4159…

Very exciting to see our single-cell epigenomic atlas of human neural organoids published in Nature Neuroscience !!! Fantastic work, Fides Zenk @EpiGN_lab, Jonas Fleck Jonas (josch1@bsky) and the whole team !!! D-BSSE, ETH Zurich Institute of Human Biology

The gradual transitions of cell states led us to a trajectory analysis using CellRank. We found that the joint latent space is the superior input compared to CITE-seq or scp-MS data alone, indicating that the two modalities provide complementary information.

Nice application of CellRank 2 to uncover differentiation trajectories in a shared mRNA/protein latent space.

🥳Proud to be part of the team that developed CellRank 2, which just won the first Helmholtz software award: hifis.net/news/2024/07/1… Philipp Weiler Michal Klein Fabian Theis dana_peer ⌨️Learn more about the software and how you can use it here: cellrank.org

Proud to be part of the team behind this powerful, efficient and versatile tool, simply said a best way to do any type of pseudo-time analysis. Standing ovation to the exceptionally talented first authors Philipp Weiler and Marius Lange.

Excited that CellRank has just won the first HelmholtzAssociation software award, see hifis.net/news/2024/07/1… - congrats Philipp Weiler, Marius Lange & dana_peer! - read about CellRank2 here nature.com/articles/s4159…

Congrats Marius Lange Philipp Weiler and team Fabian Theis dana_peer !!! It’s a fantastic tool!

I'll be in New York City until mid November, working in the amazing dana_peer lab. Let me know if you're around and want to meet up / chat 🙂

moslin combines lineage with state information to uncover cellular trajectories.

Amazing tool by Louis Kuemmerle, highly recommended.

Need to design your next Xenium/CosMx/Merfish experiment? Spapros, now out Nature Methods, allows for probe set selection for target spatial tx. Led by Louis Kuemmerle, it optimizes both cell type ID & within-cell type variation. nature.com/articles/s4159… github.com/theislab/spapr…

A great read for everyone interested in brain organoids! Congrats!