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Yang-Yu Liu reviews concepts and approaches from community ecology, network science, and control theory that are helping us make progress toward the goal of controlling the human microbiome. cell.com/cell-systems/f…

How do microbial interactions look like in dysbiosis? We performed a large-scale metagenome-wide metabolic modelling study and found that it largely depends on the disease. Preprint here: biorxiv.org/cgi/content/sh… 🧵1/5

The director’s blackboard is on the move to the new MACSYS HQ. See you soon.

It was impressive reviewing the papers from our field to show how far understanding has come for the quantitative aspects of bacterial cell surfaces and the processes by which they are made rdcu.be/c6iIS Centre to Impact AMR MACSYS-CoE Monash Biomedicine Discovery Institute

For all intents and purposes we’ve moved into our new digs.

An excellent Monday morning read. A rallying cry and a reminder that it is a thrilling time to be a theoretical biologist.

Climate change is accelerating the emergence and spread of superbugs, which thrive in warm, wet conditions. CSIRO Academy of Technological Sciences & Engineering urge governments to tackle antimicrobial resistance before we sleepwalk into a superbug's paradise. Minimising AMR The Conversation - Australia + New Zealand theconversation.com/climate-change…

🧵explaining why I won’t be joining institutional #InternationalWomansDay2023 events. If institutions want to be seen as change makers, invest in that. I’ll celebrate you when I see data showing equal recognition and 💰spent on women’s work as on men’s. #Academic #WomenInSTEM 1

Excited to announce that we are significantly expanding the computational biology program at Peter Mac Research. Applications now open for 2 group leader positions! Come and work with me! Please share widely. Closing June 1. careers.petermac.org/job/MELBOURNE-…

Bioinformaticians! Two new group leader positions have opened at PeterMac: careers.petermac.org/job/MELBOURNE-…

BondGraphs.jl: a bond graph modeling framework written in #JuliaLang github.com/jedforrest/Bon…

In case anyone missed the original post a while back, here is a *FREE* BioRender equivalent that has image assets compatible with InkScape and other illustrator platforms. bioicons.com

So happy to see this paper finally published 😍. It was a great collaboration and kudos to Elisabeth Roesch and Michael P.H. Stumpf for leading it. Friends in Biology or any Biology-adjacent field, this paper will likely be very interesting to you: nature.com/articles/s4159…

Here we show how #julialang enables new biology nature.com/articles/s4159… Thanks to Elisabeth Roesch Joe Greener Adam MacLean Huda Nassar Dr. Chris Rackauckas Tim Holy, our eagle eyed reviewers & Rita Strack Nature Methods for superb support! I love a good mountaineering analogy 😎

Take a moment to learn about Julia (the programming language) if you don't already! I think they make some really compelling points in this piece.

And this is why MACSYS-CoE will base whole cell modelling on #julialang

One of the important tests for mammalian whole cell models could be to test/explain the multiplicity of phenotypic involvements of functional variants.

Please RT: new MACSYS-CoE & Theory of Living Systems Webinar webinar by Prof. Bas Teusink theoryoflivingsystems.org/event-details/… on Wednesday 22nd of November at 3:30pm AEDT (GMT+11 - Syd/Mel/Can). Very much looking forward to our first whole cell modelling seminar.