Learning how to share my scientific talks from home (v5) In this abbreviated talk, I discuss considerations for #geneexpression count normalization in #singlecell imaging-based #spatiallytranscriptomics 📽️: youtu.be/phzYB9rmcEg?si… #bioinformatics #dataanalysis #AcademicTwitter

Inferring histology-associated gene expression gradients in spatial transcriptomic studies ⁦Nature Communications⁩ nature.com/articles/s4146…

At the end of a long road, we are very proud to present our latest work on #spatial transcriptomic analysis by Jan Kueckelhaus a neurosurgical resident FAU Erlangen-Nbg alongside with this work SPATA2 v3 will be released! Open for all spatial data formats! nature.com/articles/s4146…

Are you ever interested in the transcriptional context of a defined histological feature ? Which genes are expressed as a function of distance towards a histological feature? We have a straightforward solution in SPATA2 v3 nature.com/articles/s4146…

New in Nature Communications: Our labs new Gradient Screening algorithm and the Heart Project of my Twitterless Colleague Jan Kückelhaus advances #SpatialTranscriptomics analysis. Key advances: 1️⃣ Detects continuous expression gradients without clustering 2️⃣ Integrates histology & gene

Congratulations to the RANO group!!! Congratulations Philipp!!

Congratulations 🍾🎈🎉 very interesting study

#HappyBirthdayEANO – What do you wish for EANO? What are your hopes for the future of #NeuroOncology? We want to hear from you in our birthday guestbook. ✍️Write to us! Find out more about 30 years of EANO on our special website: 30.eano.eu 🎉 #EANO #EANO30 #btsm

🚨At #EANO2024, we already expect more than 1.000 participants! Don’t miss out on this fantastic experience to meet experts in the field of #NeuroOncology from all over the world. Today is the last day to register at regular rate. Learn more bit.ly/3z6sIcZ👈 #Glasgow

Very happy to see my main project from residency Columbia Neurosurgery finally out! Cool story on mitochondrial #metabolic vulnerabilities and #ferroptosis linked to #GBM cell states. So grateful for the support from Jeffrey Bruce Peter Canoll Peter Sims Brent Stockwell Jan Kitajewski and others

Our paper ‘Whole-embryo Spatial Transcriptomics at Subcellular Resolution from Gastrulation to Organogenesis’ is now on biorxiv! We introduce weMERFISH, a platform for profiling gene expression in entire embryos at subcellular resolution. Here is🧵biorxiv.org/content/10.110… (1/12)

Amazing work congratulations 🎉

The human brain is usually considered to be beyond the reach of most immune cells. However, analysis of people who have brain tumours has revealed tumour-targeting T cells of the immune system in skull bones near the cancer site go.nature.com/3Mxr1Zf

Interesting work! Congratulations 🎊

DNA methylation controls stemness of astrocytes in health and ischaemia | Nature wow 😮 this is so cool ⁦Martin-Villalba Lab⁩ 👏🏻👏🏻👏🏻 nature.com/articles/s4158…

Great study from Kristensen Brain Cancer Group Biotech Research & Innovation Centre (BRIC) leveraging in-situ spatial transcriptomics to investigate the infiltrative niche in GBM! Congratulations to Dylan and all others nature.com/articles/s4146…

Great collaborative study with Prevedel Lab led by Stella Soyka Marc Schubert Amr Tamimi! This technology platform will help us investigate brain tumors where they intermingle with white matter fibres and are hard to detect. See here how we can fly through the cortex and reach

Congratulations Manish, really fun to read ! Very interesting work!

Amazing work Varun !!! Impressive!

❗️Important info hidden in the long thread❗️ Download the new QuPath v0.6.0 *release candidate* for the easiest way to try this out 💻🔬🤖 github.com/qupath/qupath/…