ODGI: understanding pangenome graphs academic.oup.com/bioinformatics…

90% of bioinformatics tool users more often don't have sudo permissions. Think about that when you develop tools or write documentations.

SVAFotate: Annotation of structural variants with reported allele frequencies and related metrics from multiple datasets biorxiv.org/content/10.110…

Duet: SNP-Assisted Structural Variant Calling and Phasing Using Oxford Nanopore Sequencing biorxiv.org/content/10.110…

JBrowse 2: A modular genome browser with views of synteny and structural variation biorxiv.org/content/10.110…

Our study on the effect of #catchandrelease and temperature at release on the reproductive fitness of Atlantic salmon is finally out in Fisheries Management and Ecology (doi.org/10.1111/fme.12…)! Labo Bernatchez Louis Bernatchez @KyleWellband Laurie Lecomte.

Very excited to share our preprint presenting a NextFlow pipeline that call variants and calculate allele frequency from a pool of WGS to generate a background variant library. A thread on why I think it matters! 🧵1/7 biorxiv.org/content/10.110…

When you intersect the SV calls from the last HGSVC paper (science.org/doi/10.1126/sc…), 61% are in VNTRs! As Adam English says "Long-read SVs are VNTRs"

#Saumon atlantique: la remise à l'eau peut affecter le succès reproducteur Raphael.Bouchard Louis Bernatchez Laurie Lecomte IBIS-ULAVAL Sciences et génie – Université Laval bit.ly/3eqIaqi

Our article in Evolutionary Applications is now out! We used a large SNP dataset with >5000 samples to re-evaluate Coho Salmon conservation units in Canada doi.org/10.1111/eva.13… @QuentinREvo @x_dallaire @eric_normandeau Jean-Sébastien Moore B Koop Louis Bernatchez EPIC4: Enhancing Production of Coho Labo Bernatchez

Highly sensitive people need time in silence, alone to disconnect and to rebalance their nervous systems. Crowds can feel overwhelming and so can social interactions— know your limits and take care of your needs.

On 11/11/11 we stepped into the world Skyrim for the first time. Today The Elder Scrolls V: Skyrim turn 11 years old. 🎂 (Wow, That's a lot of "11s!")

The latest version of RStudio (2022.12) previews color of strings for both default colors and hex-type colors!🎉 #rstats #EconTwitter

We have an open PhD position in the Sophie Gobeil Lab Université Laval IBIS-ULAVAL! If you like structural biology and are interested by viruses, fungi, and host-pathogen interactions reach out! Official posting here: projets-recherche.ulaval.ca/en/project?id=…

Vous pouvez dès maintenant vous inscrire à la journée de l’IBIS en remplissant le formulaire suivant:  ------- You can now register for IBIS Day by filling out the following form: journee.ibis.ulaval.ca/formulaire-din… #journéeIBIS IBIS-ULAVAL Université Laval

Happy to share our preprint for our comparative study of #structural_variants, #SNPs and #indels in locally adapted Atlantic salmon🧬 M. Árnyasi @AL_Ferchaud M. Kent S. Lien K. Stenløkk @florent_syl @ClaireMerot Louis Bernatchez Labo Bernatchez biorxiv.org/content/10.110…

Today we lost Louis Bernatchez, he was an amazing scientist, a generous and lovely person. To me, he was a mentor and a friend, I owe him much. We will deeply miss him.

For the love of fish, nature and people: A tribute to Professor Louis Bernatchez (1960–2023) doi.org/10.1111/eva.13… Obituary to our former editor-in-chief, colleague, and friend.

My MSc paper is finally out! Many thanks to the numerous collaborators who made this work possible. NMBU members M. Árnyasi, M. Kent, S. Lien & K. Stenløkk @AL_Ferchaud @florent_syl @ClaireMerot Louis Bernatchez Labo Bernatchez Evolutionary Applications