If you're interested in IFIT proteins or using CLIP assays with other cap-binding proteins definitely check out poster #571 by Katie Rothamel at tonight's session! #RNA2018 x.com/AscanoLab/stat…

A direct comparison of 5'-end #RNAseq methods for alternate promoter and TSS usage. CAGE finds differential TSS usage between brain-related samples. bit.ly/2kP122M

Image of hypothesis generating data...

Looking for datasets to develop your cool multi-omics integrative analysis method? Check out the Scientific Data Multi-omics Data Collection where six fully linked multi-omics datasets are made accessible. nature.com/collections/hb…

Been listening to Jad Abumrad+Radiolab for over 10yrs. Thank you for having me, and for all of your excellent work. +Thank you to: -The Story Collider for producing the original show -SSE @ASNAmNat and Society of Systematic Biologists for sponsoring -@trayc7 for encouraging me to participate

Immgen at 15 nature.com/articles/s4159…

it's not the heat, it's the stupidity

New preprint from my amazing Ascano Lab mate, Katie Rothamel. Lots of hard work went into this beaut!! ELAVL1 Exclusively Couples mRNA Stability with the 3'UTRs of Interferon Stimulated Genes biorxiv.org/content/10.110…

On Monday at 11am, Katie Rothamel (Katie Rothamel) from the Ascano lab (Ascano Lab) will be defending her dissertation: "ELAV(L1)ating Insight into Dynamic mRNA-Protein Interactions in Innate Immunity". DM us for Zoom info!

New Ascano Lab paper by Katie Rothamel et al that integrates *4* different sequencing approaches to study RNA-binding by ELAVL1 in innate immunity. Congrats Katie Rothamel !!!

that sounds great. Whatever works for everyone! Not a problem. Up for anything. Down for anything. Yes to all of the above! Does anyone have a preference? Either sounds excellent. I'm open to options! I have no needs. I have no wants. I'm a lady

In collaboration with Jovanovic Lab, we’ve generated a comprehensive RNA-aware RBP-centric protein-protein interaction map by combining IP-MS with size exclusion chromatography (SEC-MS). biorxiv.org/content/10.110…

Excited to share “Charlene” Hsuan-lin Her's paper describing Mudskipper software package which demonstrates superior performance over existing tools on multiplex CLIP datasets and supports analysis of repetitive elements and small non-coding RNAs Cell Genomics cell.com/cell-genomics/…

Decoding protein–RNA interactions using CLIP-based methodologies go.nature.com/3zAQPAy #Review by Joy S. Xiang, Danielle M. Schafer, Katherine L. Rothamel & Gene W. Yeo Gene Yeo’s Lab at UC San Diego Free to read here: rdcu.be/dNdwp

Excited to announce the Inaugural RNA and AI Symposium on Oct. 29, 2024, at Sanford Consortium for Regenerative Medicine! Co-organized with Sanford Laboratories for Innovative Medicines. Join us for discussions and insights. Proudly sponsored by Eclipsebio New England Biolabs Register now: commerce.cashnet.com/UCSDCMM

🎙️ Excited to introduce the DASL Podcast, a platform dedicated to amplifying the voices of underrepresented trainees at UCSD! We dive deep into stories of resilience, overcoming challenges, and navigating the complexities of academia. #DASLPodcast buzzsprout.com/2398968

🚨 Reminder! 🚨 The registration deadline for the RNA & AI Symposium is just 2 weeks away! 🌟 Check out our impressive speaker lineup and don’t miss this chance to dive into cutting-edge research. Register now to secure your spot: commerce.cashnet.com/UCSDCMM

🚨Excited to share another paper in Molecular Cell!🚨 In collab w/ Columbia University’s Marko Jonvanoic, Lena Street, & @HoustonMethodist’s Kris Brannan, we mapped RNA-aware, RBP-centric protein-protein interactions (PPIs) across the mRNA life cycle in human cells! cell.com/molecular-cell…