Very excited to present new work from my lab on genomic deep learning at Kipoi Seminar next Wed (10 Jan 2024)! 8:30a - 9:30a Pacific Time 11:30a - 12:30p Eastern Time 5:30p - 6:30p Central European Time Register for zoom link: tum-conf.zoom.us/meeting/regist… Details of talk:

Here is my Kipoi webinar talk (~45 min) on "Interpreting rules of gene regulation learned by deep learning"! youtube.com/watch?v=EXtf0k…

Join us for our next Kipoi Seminar with Eric Nguyen from Chris Ré's lab Stanford University 👉HyenaDNA: Long-range Genomic Sequence Modeling at Single Nucleotide Resolution 📆Wed Feb 7, 5:30pm CET 🧬tum-conf.zoom.us/meeting/regist…

Join us for our next Kipoi Seminar with Maria Brbic Maria Brbic EPFL! 👉Bridging AI and Single-cell Genomics: Towards AI-driven Discoveries 📆Wed Mar 6, 5:30pm CET 🧬tum-conf.zoom.us/meeting/regist…

Don't miss it, it will not be recorded this time! Hope to see many of you there 🧬

Join us for our next Kipoi Seminar with Kseniia Dudnyk Kseniia Dudnyk from Jian Zhou's lab at UT Southwestern! 👉Sequence basis of transcription initiation in the human genome 📆Wed April 3, 5:30pm CET 🧬tum-conf.zoom.us/meeting/regist…

Join us for our next Kipoi Seminar with Thomas Pierrot Thomas Pierrot InstaDeep! 👉The Nucleotide Transformer initiative: building and evaluating robust foundation models for genomics 📆Wed May 8, 5:30pm CET 🧬tum-conf.zoom.us/meeting/regist…

Don't miss our next Kipoi Seminar with Sara Mostafavi Sara Mostafavi University of Washington! The meeting will not be recorded! 👉Machine learning models of differential gene expression 📆Wed June 5, 5:30pm CET 🧬tum-conf.zoom.us/meeting/regist…

Join us for our next Kipoi Seminar with Sagar Gosai Sager Gosai Ryan Tewhey The Jackson Laboratory! 👉Machine-guided design of synthetic cell type-specific cis-regulatory elements 📆Wed July 3, 5:30pm CET 🧬 tum-conf.zoom.us/meeting/regist…

Join us for the next Kipoi Seminar ft. Max Horlbeck & Ruochi Zhang (Ruochi Zhang) from Jason Buenrostro's lab at Harvard University & Broad Institute! 👉Single-cell footprinting reveals the organization of cis-regulatory elements 📆Wed Sep 4, 5:30pm CET 🧬tum-conf.zoom.us/meeting/regist…

Excited to present “scooby”, which models multi-omic profiles (scRNA-seq coverage & scATAC-seq insertions) directly from 500 kb DNA sequence at single-cell resolution. This was a fantastic collaboration co-led with Johannes Hingerl. biorxiv.org/content/10.110…

Join us for the next Kipoi Seminar with Avantika Lal @lal_avantika Genentech! 👉Decoding sequence determinants of gene expression in diverse cellular and disease states 📆Today Wed Oct 2, 5:30pm CET, not recorded! 🧬 Registration: tum-conf.zoom.us/meeting/regist…

Join us for the next Kipoi Seminar with with Abdul Muntakim Rafi (Rafi) Abdul Muntakim Rafi Carl de Boer University of British Columbia! 👉Detecting and avoiding homology-based data leakage in genome-trained sequence models 📅Wed Nov 6, 5:30pm CET 🧬tum-conf.zoom.us/meeting/regist…

Join us for our next Kipoi Seminar with with Dmitry Penzar, Dmitry Penzar @ autosome.org! 👉LegNet: parameter-efficient modeling of gene regulatory regions using modern convolutional neural network 📅Wed Dec 4, 5:30pm CET 🧬 kipoi.org/seminar/ 🦋@kipoizoo.bsky

Join us for our next Kipoi Seminar with with Pedro Tomaz da Silva Pedro Tomaz da Silva gagneurlab TU München! 👉Nucleotide dependency analysis of DNA language models reveals genomic functional elements 📅Wed Feb 5, 5:30pm CET 🧬kipoi.org/seminar/ 🦋kipoizoo.bsky

Join us for our next Kipoi Seminar with with Alexander Sasse Uni Heidelberg ZMBH - Center for Molecular Biology Heidelberg 👉Advanced training strategies for genomic sequence-to-function models 📅 Wed March 5, 5:30pm CET 🧬 kipoi.org/seminar/ 🦋 kipoizoo.bsky.social

Join us for our next Kipoi Seminar with Lucía Barbadilla, De Ridder Group Lucía Barbadilla De Ridder Lab 👉PARM: The regulatory grammar of human promoters uncovered by MPRA-trained deep learning 📅Wed April 2, 5:30pm CET, not recorded! 🧬kipoi.org/seminar/ 🦋@kipoizoo.bsky.social

Join us for our next Kipoi Seminar with Laura Martens Laura Martens (@lauradmartens.bsky.social) gagneurlab TU München 👉scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution 📅Wed May 7, 5:30pm CET 🧬kipoi.org/seminar/ 🦋kipoizoo.bsky

Join us for our next Kipoi Seminar with Katherine Pollard, Gladstone Inst. of DS & Biotech UCSF,Biohub Gladstone Institutes UC San Francisco Chan Zuckerberg Biohub Network 👉Human variant interpretation with sequence-to-activity models 📅Wed June 4, 5:30pm CET 🧬kipoi.org/seminar/ 🦋@kipoizoo.bsky.social

Join us for our next Kipoi Seminar with Yoseph Barash,University of Pennsylvania Penn Genetics Penn Computer and Information Science Penn IBI Yoseph Barash 👉From identifying UTR regulatory elements to potential RNA therapeutic targets 📅Wed Jul 2,5:30pmCET 🧬kipoi.org/seminar 🦋@kipoizoo.bsky.social