.Heber Rocha: This generates terabytes of data. We need to reduce dimensionality before we can start clustering trajectories. We use a nice max pooling-like representation to vastly compress each snapshot. Old grad school work on EasyBMP paid off. :-) #SC21 #CAFCW21

.Heber Rocha: The first approach was a mess. So, we worked with Ansu Chatterjee's lab at U Minnesota to use much more advanced bi-clustering. Output space clusters into distinct trajectories, and distinct parts of input space map there. #SC21 #CAFCW21 #mathonco

Just published! We proudly present "Hallmarks of Cancer: New Dimensions" by Douglas Hanahan, the third update to the seminal series. bit.ly/3GkSqZK Ludwig Cancer

I want to thank Furkan Kurtoglu 🧬🦠🖥️🧫 and Aneequa in public for taking over the mission of presenting the PhysiCell minicourse in my place this week. I'm glad to hear about the great job you guys did.

Save the date! The 2022 Virtual PhysiCell Workshop and Hackathon is July 24-30, 2022. Details to follow! #mathonco

Applications for our 2022 PhysiCell workshop / hackathon are now OPEN! Please RT!🧵1/6 Link: github.com/PhysiCell-Trai… This virtual course will teach concepts of agent-based biological simulations, through our open source PhysiCell package. #mathbio #mathonco #opensource

Last quick test before PhysiCell 1.10.0 release. Differential adhesion via springs. * cells stochastically form spring links * springs stochastically break * grey-grey elastic constant = 1 * grey-red = 0.1 * red-red = 0.5 * Unadhered cells more motile #opensource #mathbio

One last chance to apply for our virtual workshop and hackathon! Please retweet! Mark Chaplain Mohit Kumar Jolly Morgan Craig | Quantitative Medicine Lab

We had more fantastic talks in the afternoon and evening sessions of our #mathonco minisiymposium at #USNCCM17!! Big thanks to all the speakers for their great work and the interesting discussion!!

Good morning #USNCCM17 !! Today we have the last session of our #mathonco minisymposium, which will be started by a keynote talk by Heber Rocha. Come check it out !! All info below 👇👇

And we had another fabulous session this morning to close our #mathonco minisiymposium this morning ☺️ Many thanks to all the speakers and the audience for the engaging discussion!!

So fun to finally meet someone who has been a collaborator & friend for the past 3.5yr in real life! Heber Rocha

🏁 Last session of the EMBO Workshop 2023: #Computationalmodels of life by Javier Conejero (BSC-CNS) on "Programming workflows with #PyCOMPs and #PerMedCoE Building Blocks" A big thank you to everyone for making the #EMBOworkshop such a success! #HPC #EMBOcompModels

Season's Greetings to everyone from PhysiCell

Hope you were happy with Gangnam style banquet of #SMB202!

OK, I'm feeling better today and ready for the live 5-minute tumor-immune model! See you in the 2 on session in 218!! KSMB-SMB2024 #smb2024

Great story on our new @NCI_CSSI ITCR project with @fertiglab! This project sustains, integrates, & grows 2 #mathonco communities (agent-based modeling with PhysiCell and spatial transcriptomics with CoGAPS). 1/5 @NCIPhySci @NCIsysbio Melanoma Research news.iu.edu/live/news/3795…