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As a member of the Genome Research Editorial Board, I would like to highlight a compelling two-part series on long-read sequencing. It is a must-read for anyone interested in where the field is headed with insightful work throughout. #genomics #genetics #longread #dna #rna

The new issue of Genome Research is now live! Follow the link to a new ultra-long nanopore sequencing toolkit, a unified analysis of atlas single-cell data, and more! tinyurl.com/Genome-Res-35-5

GNNome was published in Genome Research! This is a novel paradigm for de novo genome assembly based on GNNs. Without explicitly implementing any simplification strategies, it can achieve results comparable or higher than other SOTA tools. Paper, code, and overview are 👇 [1/8]

Our publication in  Genome Research presents a new paradigm in genome de novo assembly - using AI instead of classical algorithms. Here, we replace the Layout phase with Graph Neural Networks

1/ 🧬 A Hitchhiker’s Guide to Long-Read Genomic Analysis is out now Genome Research! This mini-review walks through the latest advances in long-read DNA sequencing — from assemblies to variant calling to epigenetics. Link 🔗 genome.cshlp.org/content/35/4/5… 🧵👇

Fu Xiang's paper is finally out Genome Research and we made the cover!! This was only possible due to the brilliant illustration by paola soto castro.bsky.social Paper here: genome.cshlp.org/content/35/5/1… See below for more details!🧵

The 38th annual Biology of Genomes meeting starts TONIGHT! Make sure to use #BOG25 for all of your posts and have a great week 🧬

Call for Papers! Genome Research is now encouraging submissions for a Special Issue on The Genetics and Genomics of Somatic Mosaicism, Guest Edited by Drs. Gilad Evrony, Eunjung Alice Lee, and Raheleh Rahbari. tinyurl.com/Call-for-paper… #BOG25 #KSMosaicism25 #MITS25 #somaticmosaicism

Call for Papers! Genome Research is now encouraging submissions for a Special Issue on The Genetics and Genomics of Somatic Mosaicism, Guest Edited by Drs. Gilad Evrony, Eunjung Alice Lee, and Raheleh Rahbari. tinyurl.com/Call-for-paper… #BOG25 #KSMosaicism25 #MITS25 #somaticmosaicism

Now up at #BOG25 - Nadav Ahituv discussing functional characterization of gene regulatory elements using MRPAs. Read more about the MPRAbase in Genome Research. tinyurl.com/Genome-Res-280…

This Wednesday and Friday, meet the editors of Genome Research. We will be available to discuss your latest research and to answer any questions about the journal. In addition, hear about our upcoming issue on Somatic Mosaicism. #BOG25

🧵 Thread: Introducing ENACT & ENACTdb - Decoding Exon Polymorphism & Proteome Diversity #Genomics #Proteomics #AlternativeSplicing #ExonAnnotation Genome Research Bioinformatics Advances

1/14 🌟 Excited to share our latest work from Dr. Shashi Pandit's group (IISER Mohali, Dept. of Biological Sciences (DBS), IISER Mohali), published in Genome Research: ENACT – a new framework to systematically annotate exons. Also introducing ENACTdb (Bioinformatics Advances) – a complementary DB & visualization tool!

New paper out in Genome Research on using contrastive self-supervised learning for spatial domain detection with multi-omics data! Huge congratulations to Jianing Yao and coauthors Jinglun Yu, Brian Caffo Stephanie Page & Keri Martinowich! 🧬 doi.org/10.1101/gr.279…

The new issue of Genome Research is now live. Follow the link to new research on TP53 regulation of transposable elements in cancer, gut microbiome–associated protists, and more! tinyurl.com/Genome-Res-35-6

Happy to share that our latest research study is out now Genome Research Androgen receptor-mediated assisted loading of the glucocorticoid receptor modulates transcriptional responses in prostate cancer cells genome.cshlp.org/content/early/…