Meet Iris Diana Yu, our bioinformatician! She actively contributes to the analysis workflows and production pipelines for transcriptomics for the Expression Atlas. She is also Co-organiser and trainer in single-cell RNA-seq analysis trainings with @ebitraining

Exciting news! The latest Expression Atlas bulk release is out, featuring 4476 datasets across 66 species. Explore the newest EDTL dataset by DIAMONDS and check out 15 new human proteomics datasets from our collaboration with @PRIDE_EBI at @EMBLEBI. Don't miss out! 🧬

Silvie & Liora from our team are attending the European Society for Spatial Biology meeting today, working towards establishing standards in spatial transcriptomics. Want to contribute? Share your thoughts through this short survey: forms.gle/HY4zNSN4HMr1E2… #SpatialTranscriptomics

Welcome Christina Ernst !

From the Functional Genomics team at EMBL-EBI, we extend our warmest wishes for a joyous holiday season filled with cherished moments and success in the New Year. 🎄 #MerryChristmas2024 #MerryChristmas

Excited to announce that 15 new human proteomics datasets are now available in our latest bulk release, thanks to our collaboration with PRIDE at EBI! Learn more in our recent publication: pubs.acs.org/doi/10.1021/ac… 🧬 #Proteomics #Research

We're excited to announce that we're now on Bluesky! Follow us at expressionatlas.bsky.social for updates and join the conversation. #BlueSky #NewBeginnings

Excited to invite you to the Spatial Transcriptomics FAIR Data Management Workshop on Feb 26-27 at EMBL-EBI (hybrid)! Join us to discuss metadata & data standards, archiving, and data retrieval. Agenda & registration: tinyurl.com/spatial2025

The bioinformatics arm of the Functional Genomics Team and Expression Atlas will participate in the nf-core #hackathon at the Wellcome Genome Campus Campus Check out our challenge and join us, everyone is welcome! EMBL-EBI Wellcome Sanger Institute #nextflow #singlecell

Thank you to everyone who attended the ELIXIR Europe #SpatialTranscriptomics FAIR Data Management Workshop over the last two days, both EMBL-EBI and online! The discussions on metadata & data standards, archiving, and data retrieval were productive and insightful. #FAIRdata

This week, our team will be attending the Spatial Transcriptomics & Proteomics event on March 5-6 at AstraZeneca Discovery Centre !🧬 If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking EMBL-EBI EMBL-EBI Training

If EMBL-EBI data resources have saved you time & effort, now is your chance to give back! Fill in a 15-minute survey to help us: 🌍Demonstrate the real-world impact of these resources 🧠Understand your needs 🌟Secure continued funding Closes 16 July 👉 surveymonkey.com/r/QGFMBH8?chan…]

Our bioinformaticians @AnilThanki, Iris Diana Yu, and Pedro Madrigal will be attending #ISMBECCB2025! Catch our talks and posters on Expression Atlas, Bioconductor, and PERSIST-SEQ #ISMBECCB #ISMB #ECCB #singlecell

We are seeking a Scientific Database Curator at EMBL-EBI in collaboration with the Saez-Rodriguez Group and GSK. This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources Deadline 20 July

The Functional Genomics Team at EMBL-EBI is open to hosting #ARISE2 fellows! If you're interested in research infrastructure we welcome project ideas that support transcriptomics data reuse - incl. spatial, single-cell, or AI-ready infrastructure. embl.org/training/arise…

Exciting news! The latest Expression Atlas bulk release is out, featuring 4562 datasets across 67 species. Explore 12 new plant datasets from sorghum, rice, Arabidopsis and maize, 🌾🌽 contributed by our Gramene Database collaborators. Don't miss out! 🧬

Did you attend ISCB News's ISMB/ECCB 2025 in Liverpool? Colleagues from across EMBL-EBI (including reps from #Ensembl, The DECIPHER Project, EMBL-EBI Training, Protein Data Bank and Expression Atlas) surely did! What was your highlight of the conference? 🧬

Interested in spatial transcriptomics, interactive visualisation, and AI? We’re teaming up with Haniffa Lab and Saez-Rodriguez Group on Project 5 - for someone keen to build open tools that make complex biological data more accessible! Apply by 30 Sep: ebi.ac.uk/research/pos...

We are looking for an ESPOD postdoctoral fellow in collaboration with Haniffa Lab to develop an Interactive Visualisation and Conversational AI Tools for Spatial Transcriptomics Data. ebi.ac.uk/research/postd… EMBL-EBI Wellcome Sanger Institute

🚀 Expression Atlas Release 43 is live! 🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns. 🔎 Plus, a new technology filter for faster dataset discovery. 🔗ebi.ac.uk/gxa EMBL-EBI