Omar S.M. El Nahhas (@elnahhasosm) 's Twitter Profile
Omar S.M. El Nahhas

@elnahhasosm

Computer Science PhD Candidate @ Kather Lab for Clinical AI.

Researching better methods for cancer biomarker prediction from pathology slides using AI.

ID: 1566011978174402562

linkhttp://kather.ai calendar_today03-09-2022 10:35:31

72 Tweet

146 Followers

98 Following

Omar S.M. El Nahhas (@elnahhasosm) 's Twitter Profile Photo

Being able to see the field >2 years ahead and trying to convince people in the present is not an easy job! ๐Ÿ’ญ๐Ÿš€

Omar S.M. El Nahhas (@elnahhasosm) 's Twitter Profile Photo

Excited to present my latest work accepted in #MICCAI2024 on joint multi-task learning in computational pathology! We reach SOTA performance on predicting MSI and HRD status by learning auxiliary regression tasks related to the tumor microenvironment ๐Ÿ”ฌ arxiv.org/abs/2403.03891

Excited to present my latest work accepted in #MICCAI2024 on joint multi-task learning in computational pathology!

We reach SOTA performance on predicting MSI and HRD status by learning auxiliary regression tasks related to the tumor microenvironment ๐Ÿ”ฌ

arxiv.org/abs/2403.03891
Omar S.M. El Nahhas (@elnahhasosm) 's Twitter Profile Photo

Today marks the end of the #TANGERINE summer school 2024, where I had the pleasure to present the final session on commercializing academic research ๐Ÿ—ฃ๏ธ

Today marks the end of the #TANGERINE summer school 2024, where I had the pleasure to present the final session on commercializing academic research ๐Ÿ—ฃ๏ธ
Omar S.M. El Nahhas (@elnahhasosm) 's Twitter Profile Photo

Today I had my computer science PhD status talk, a formal requirement enabling submission of the thesis! The examination was a success, and Iโ€™m now well-equipped with feedback to finalize my PhD thesis ๐ŸŽ‰ Big thank you to my mentor/supervisor Jakob Nikolas Kather and MOSAIC Group! ๐Ÿคฉ

Today I had my computer science PhD status talk, a formal requirement enabling submission of the thesis!

The examination was a success, and Iโ€™m now well-equipped with feedback to finalize my PhD thesis ๐ŸŽ‰ 

Big thank you to my mentor/supervisor <a href="/jnkath/">Jakob Nikolas Kather</a> and <a href="/MOSAICgroup1/">MOSAIC Group</a>! ๐Ÿคฉ
Jakob Nikolas Kather (@jnkath) 's Twitter Profile Photo

New research from katherlab on #computational #pathology: We benchmark pathology foundation models ๐Ÿ‘‡ Several of these are publicly available under permissive licenses. arxiv.org/abs/2408.15823 Some takeaways: 1. The vision-language model CONCH (Faisal Mahmood) outperforms

New research from <a href="/katherlab/">katherlab</a> on #computational #pathology: We benchmark pathology foundation models ๐Ÿ‘‡ Several of these are publicly available under permissive licenses. 
arxiv.org/abs/2408.15823 
Some takeaways:
1. The vision-language model CONCH (<a href="/AI4Pathology/">Faisal Mahmood</a>)  outperforms
Faisal Mahmood (@ai4pathology) 's Twitter Profile Photo

This article (arxiv.org/pdf/2408.15823) from Jakob Nikolas Kather is the most comprehensive effort to compare comp path foundation models to date. Showing that multimodal FMs like CONCH outperform unimodal FMs on unimodal tasks, and that the diversity of data >> quantity of data.

Omar S.M. El Nahhas (@elnahhasosm) 's Twitter Profile Photo

Happy to announce that StratifAI has raised โ‚ฌ1.5M in pre-seed funding ๐Ÿš€ Check out the press release below ๐Ÿ‘‡ t.ly/ydrmF And we're also hiring for roles in Berlin ๐Ÿ‘‡ t.ly/y0F-x

Omar S.M. El Nahhas (@elnahhasosm) 's Twitter Profile Photo

Honored to have been invited for an oral presentation in addition to my poster presentation at #MICCAI2024 for my latest paper โ€œJoint multi-task learning improves weakly-supervised biomarker prediction in computational pathologyโ€ ๐Ÿคฉ See you there! katherlab Else Krรถner Fresenius Center for Digital Health

Omar S.M. El Nahhas (@elnahhasosm) 's Twitter Profile Photo

Latest publication out :) Very interesting experience to deploy a software solution on so many hospital systems across the world, which shaped the protocol until what itโ€™s finally become. Thank you to all the collaborators who tested and improved the protocol!๐Ÿคฉ

Nature Protocols (@natureprotocols) 's Twitter Profile Photo

#NewNProt moves from whole-slide image to #biomarker prediction: end-to-end weakly-supervised #deeplearning in #computationalpathology bit.ly/3zoUh1w

Omar S.M. El Nahhas (@elnahhasosm) 's Twitter Profile Photo

Happy to see our latest Nature Protocols protocol being included in 'Cancer at Nature Portfolio' - a curated collection of cutting-edge cancer research, methods, and reviews from across Nature journals. Check it out here ๐Ÿ‘‡ nature.com/collections/bpโ€ฆ

Happy to see our latest <a href="/NatureProtocols/">Nature Protocols</a> protocol being included in 'Cancer at Nature Portfolio'  - a curated collection of cutting-edge cancer research, methods, and reviews from across Nature journals.

Check it out here ๐Ÿ‘‡
nature.com/collections/bpโ€ฆ
Omar S.M. El Nahhas (@elnahhasosm) 's Twitter Profile Photo

Just arrived at #MICCAI2024 in Marrakesh, and already enjoying the beautiful weather and amazing food ๐Ÿ‡ฒ๐Ÿ‡ฆ has to offer. Looking forward to giving my oral presentation on Wednesday, and exchange ideas + get inspired from all the great research work here ๐ŸŒž

Just arrived at #MICCAI2024 in Marrakesh, and already enjoying the beautiful weather and amazing food ๐Ÿ‡ฒ๐Ÿ‡ฆ has to offer.

Looking forward to giving my oral presentation on Wednesday, and exchange ideas + get inspired from all the great research work here ๐ŸŒž
Omar S.M. El Nahhas (@elnahhasosm) 's Twitter Profile Photo

Had a great time at #MICCAI2024 ๐Ÿ‡ฒ๐Ÿ‡ฆ, giving an oral presentation in front of a large audience, doing a poster session with dozens of interested people, and connecting with amazing people in the field of medical imaging ๐Ÿคฉ See you at the next edition! ๐Ÿ‡ฐ๐Ÿ‡ท

Had a great time at #MICCAI2024 ๐Ÿ‡ฒ๐Ÿ‡ฆ, giving an oral presentation in front of a large audience, doing a poster session with dozens of interested people, and connecting with amazing people in the field of medical imaging ๐Ÿคฉ

See you at the next edition! ๐Ÿ‡ฐ๐Ÿ‡ท
Kevin Boehm (@kevinmboehm) 's Twitter Profile Photo

Good to see this in print. We built Orpheus, a model to infer OncoType score from H&E and pathology text reports, finding that multimodality strengthens inference. We also tuned directly on metastatic recurrence to refine TAILORx low/intermed. risk groups. nature.com/articles/s4146โ€ฆ

MSK Library (@msklibrary) 's Twitter Profile Photo

Featured today by MSK Library: Multimodal histopathologic models stratify hormone receptor-positive early breast cancer #BreastCancer #Histopathology #HormoneReceptorPositive #CancerResearch #PrecisionMedicine Kevin Boehm Omar S.M. El Nahhas Antonio Marra Lior Braunstein

Featured today by <a href="/MSKLibrary/">MSK Library</a>: Multimodal histopathologic models stratify hormone receptor-positive early breast cancer

#BreastCancer #Histopathology #HormoneReceptorPositive #CancerResearch #PrecisionMedicine

<a href="/kevinmboehm/">Kevin Boehm</a> <a href="/ElNahhasOSM/">Omar S.M. El Nahhas</a> <a href="/antoniomarraMD/">Antonio Marra</a> <a href="/LiorBraunstein/">Lior Braunstein</a>