Check out our recent work CARD, a computational fast and memory efficient statistical tool to (1) perform spatially informed cell type deconvolution with or without single cell RNAseq (scRNA-seq) reference

Inferring gene regulatory networks from single-cell multiome data using atlas-scale external data go.nature.com/43YySqO

Thank you, Gang, for your interest and support to this method.

Thank you, Clint!

Thank you, Ye! When you try it on your own data, please let us know your experience. I believe your comments will be helpful to improve the software.

Thank you, Mingyao!

Thank you for your constructive comments during your visit to Clemson last year, which are so helpful.

In the latest issue! Single-cell dissection of the human motor and prefrontal cortices in ALS and FTLD dlvr.it/T5RGJd

Great question. LINGER uses all data to infer a cell population level GRN first. A cell type/state specific GRN will be generated in the second step by combining the cell population level GRN and cell type/state specific expression and accessibility profile.

Call for Papers and Abstracts The 12th International Conference on Intelligent Biology and Medicine (ICIBM 2024) will be held in Houston, TX, USA. Please contact our main organizers (PC chairs) Qianqian Song @ecique_ or [email protected].

A great strategy to estimate variant effect using integrated experimental and computational approaches.

Zhana Duren都仁扎那 Clemson Center for Human Genetics Clemson University College of Science Clemson University Clemson researchers pave the way for precision medicine with AI #NBTintheNews via Clemson University news.clemson.edu/clemson-resear…

#STATGEN2024, Dr. Qiuyue Yuan from my group is presenting our recent research about gene regulatory analysis from single cell multiome data.

Enjoyed the talks at the #STATGEN 2024 and the morning jogging at the Schenley park.

scQers are quantitative single cell expression reporters reported by Jay Shendure and colleagues. They enable high-sensitivity quantitative characterization of developmental cis-regulatory elements at the single-cell level. nature.com/articles/s4159…

Congrats!

Thrilled to share that I just spoke at ICSA 2024 Applied Statistics Symposium! Big thanks to the organizers and everyone who joined the session.🌟 Your presence made it special! #ICSAnashville - via #Whova event app tinyurl.com/2cvo8c9o

Unlocking the power of Spatial omics with AI!

What gets erased when you integrate single cell data, and can you recover it? Finally, we know what happens and how to recover the lost signals. So excited to share CellANOVA, published online today in NBT! go.nature.com/4hZnzW5

We are so happy to publish our new foundation model in Nature Methods. we trained OmiCLIP, a vision-omics due modalities model to bridge pathology image and transcriptomic, and Loki, a platform using OmiCLIP as backbone for ST and HE image cross analysis. nature.com/articles/s4159…