"Good proteomics QC is already here – it's just not very evenly distributed" - William Gibson (probably) A thread about where we are and some recent papers (including our "review" paper below with Magnus Palmblad (@[email protected]) and Yasset Perez-Riverol): chemrxiv.org/engage/chemrxi… 1/n

Seeking new lab or company positions? Eager to explore international opportunities and fellowships? Join our free Job Fair & Student Exchange event! Registration is required - secure your spot today! forms.gle/zmZKoiXxjt3m2c…

Integrating DIA Single-Cell Proteomics Data with the DiagnoMass Proteomic Hub for Biological Insights pubs.acs.org/doi/10.1021/ja… --- #proteomics #prot-paper

Calculating and Reporting Coefficients of Variation for DIA-based Proteomics dlvr.it/TDD6zG Mini write up about CVs with suggestions for technical studies. It highlights some pitfalls and provides an R package to calculate CVs #proteomics #TeamMassSpec

GlyCombo is now published! Protea Glycosciences's first paper is a good representation of what our company aims to do, accelerate glycoscience research. In a nutshell, it is free, open-source software that rapidly assigns glycan compositions to precursor masses. pubs.acs.org/doi/10.1021/ja…

metaExpertPro: a computational workflow for metaproteomics spectral library construction and data-independent acquisition mass spectrometry data analysis mcponline.org/article/S1535-… --- #proteomics #prot-paper

Matthias Matthias Mann Lab shows first joint proteome and RNA workflow in same cell - very exciting, and lots of promises to build multimodal atlases in nearer future!

Fabian Theis great work and very exciting! but not quite the first. The guys at PNNL have had a pre print on this for about two years: biorxiv.org/content/10.110…

Check out our preprint here! biorxiv.org/content/10.110…

Thrilled to share our „PRedictor Of PHEnoTypes“ model Prophet! Led by Alejandro Tejada Lapuerta & Yuge Ji, Prophet is a transformer-based model that predicts outcomes for unseen experiments. It aims to understands biology by learning across assays and phenotypes over 4.7M+ experiments.

🔴 Last days! ⚡Practical Course Targeted Proteomics Targeted proteomics has revolutionized the landscape of proteomic research. The course fills in the gap between theory and the actual implementation of the targeted proteomics workflow. 🗓️ Nov 17-22 🔗 courses.crg.eu/events/targete…

I'm excited to share that I'll lead a new Center of Excellence for Metaproteomics, a joint venture between the University of Vienna and Bruker. This initiative will leverage cutting-edge mass spectrometry and AI to unravel the mysteries of the microbiome. medienportal.univie.ac.at/en/media/recen…

"🎙️ New episode of The Proteomics Show! Ep 50: Why study proteins? Matthias Matthias Mann Lab breaks down the impact of proteomics, future directions and implications for biology and medicine. open.spotify.com/episode/16O5ju…

News in Proteomics Research Blog Post | Did y'all know DIA-NN has an integrated viewer now?! proteomicsnews.blogspot.com/2024/09/did-ya… --- #proteomics #prot-other

New preprint from the Schacherer Lab! Here, we revisit the population structure somewhat. But the main objective is rather to have a resource for the community around 3,034 genomes, capturing ~93% of the genetic diversity of the S. cerevisiae species. biorxiv.org/content/10.110…

High-quality peptide evidence for annotating non-canonical open reading frames as human proteins biorxiv.org/content/10.110…

Data-Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome biorxiv.org/content/10.110…

How did nobody come up with this earlier?? An amazing initiative of our Young proteomics investigators club!

Join our Proteomics Facility at U Michigan cores.research.umich.edu/core/proteomic…! We're hiring a Research Lab Specialist Senior. Help us with innovative sample prep, PTMs, low input samples etc. but also regular Core functions. Collaborate with our FragPipe team. Apply: careers.umich.edu/job_detail/254…

I’m excited to announce the launch of our company KPL ApS , and website: kplbio.com.  The goal is to make some cool proteins, starting with proteases for #proteomics purposes ☺️. First product is the infamous LysC (lys.bio) but stay tuned more!