Yutong Qiu (Yutong Qiu from Ray and Stephanie Lane Computational Biology Dept.) giving a talk at #WABI2019 on her paper with Cong Ma (Cong Ma) introducing the "Multiple Compatible Arrangements Problem" (MCAP) to find structural variants from gene expression sequencing (RNA-seq). dx.doi.org/10.4230/LIPIcs…

Algorithm rapidly finds anomalies in gene expression data & works to identify and correct mistakes it may have made. To read more, visit our website: bit.ly/2OSBmRc

Thank you, Carl! It's a very precious experience for me to work on this work in this group!

I'm so honored to be awarded Damon Runyon Cancer Research Foundation Quantitative Biology Fellowship and excited to keep working on modeling 3D tumors using single-cell and spatial multi-omics with Dr.Ben Raphael and Dr. Li Ding.

Happy to share our paper (academic.oup.com/mbe/advance-ar…) on identifying transcription regulatory sequences (TRSs) and genes in coronavirus genomes, which also appeared in #RECOMB2022. This started as a course project by Palash Sashittal and Chuanyi Zhang in my bioinformatics class. (1/n)

Spatial transcriptomics meets complex analysis – our new method Belayer models spatial gene expression in layered tissues, now published in Cell Systems. Work led by Cong Ma and Uthsav Chitra with Shirley Zhang. 1/6 authors.elsevier.com/a/1fxla8YyDfj7…

Excited to present our work CalicoST (biorxiv.org/content/10.110…) for inferring allele-specific CNAs and phylogeography at #Recomb2024 on Apr 29 15:18pm.

Want to go to NYC to watch a broadway play~

Thks for all the support! In case is not obvious, the accusations regarding Salmon are false, see detailed response: bit.ly/SalmonResponse

Scallop software from Ray and Stephanie Lane Computational Biology Dept. reconstructs RNA transcripts more accurately, will improve understanding of gene expression. Nature Biotechnology bit.ly/2jn9aKi