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Check out this new paper from myself, Bishal Paudel Cameron Griffiths and Janes Lab ! We also developed a web tool for you to upload a table of transcriptomic data and get protein copy number estimates! Proteome-wide copy-number estimation from transcriptomics biorxiv.org/content/10.110…

Check out our latest preprint that statistically relates mRNA-protein abundances to make protein copy number estimates from transcriptomics! A web tool was also developed to make the estimates broadly available. @AndrewSweatt1 Cameron Griffiths Bishal Paudel biorxiv.org/content/10.110…

One last little hike in Virginia before moving to Boston :( #humpbackrocks

This has been an exciting and busy week for our lab Virginia BME as we're participating and presenting research at three conferences: @icsb2023 (Yoni Cara Abecunas, PhD 🇺🇦 Luisa Quesada), Biomedical Engineering Society (Henry Gao), and Cold Spring Harbor Laboratory Cell State Conversions Meeting (Magda Bujnowska, Kim Nguyen).

I had a great time presenting my computational project identifying synthetically lethal targets associated with metabolic heterogeneity in cancer at @icsb2023! It was great catching up with my old labmates and PI Mohammad Fallahi-Sichani 🧬 🔬

Multivariate modeling of metabolic state vulnerabilities across diverse cancer contexts reveals synthetically lethal associations biorxiv.org/cgi/content/sh… #biorxiv_cancer

Excited to share my latest pre-print from Mohammad Fallahi-Sichani 's lab, "Multivariate modeling of metabolic state vulnerabilities across diverse cancer contexts reveals synthetically lethal associations." 🧬biorxiv.org/content/10.110… #DataScience #MachineLearning

We officially closed a joyful chapter with hooding Dr Cara Abecunas, PhD 🇺🇦 at the commencement ceremony. It was double fun to participate as a University of Michigan alumnus. Great to see former U-M BME colleagues Chandrasekaran lab Ariella Shikanov. Congratulations to all 2023 graduates!

Just a couple of University of Michigan PhDs hanging out! I had a great time catching up with Mohammad Fallahi-Sichani at the hooding ceremony and visiting some of our favorite places in Ann Arbor. Go Blue 💙💛

When you take a Midwesterner skiing for the first time Gunstock Mountain Resort

Small hike near Lake Winnipesauke after a long day of skiing at Gunstock mountain yesterday #newhampshire ⛰️

I should be selected to go to the U of M national championship game! While completing my PhD at Michigan, I had to move to UVA to continue my research and I haven’t been to a game since before COVID. Some of my favorite memories in A2 were in the big house 💙💛 Dave Portnoy

To everyone that doubted us. To everyone that went against us. To everyone who didn't think we could do what we just did. We have one word for you... Bet. #GoBlue

On route to Yosemite and Sequoia, but next trip will definitely consider Utah 😍

One of the hardest hikes I’ve ever done with kira 💪🏼 gained about 3,000 feet in elevation in the span of 3 miles. But the views are amazing at Yosemite 😍

Happy to share work by 3 UVA MSTP students Jeffrey Hsu, Kim Nguyen & Magda Bujnowska: A protocol for iterative indirect immunofluorescence imaging in cultured cells, tissue sections & chromosome spreads. Virginia BME sasco.virginia UVA Cancer Center Janes Lab star-protocols.cell.com/protocols/3587

Multivariate analysis of metabolic state vulnerabilities across diverse cancer contexts reveals synthetically lethal associations dlvr.it/TDZj1N

Excited to share our lab's latest work by Cara Abecunas, PhD 🇺🇦 in collaboration with Audrey Kidd, Ying Jiang and Hui Zong: A systems approach to identify synthetically lethal associations between tumor metabolic state, driver mutations, and actionable targets. Virginia BME UVA Cancer Center