Quick personal story thread about this work - A few years ago we were working with Jean-Christophe on a prototype of Icy3. We wanted to get closer to the ImageJ ecosystem, and in particular join the community effort in making Deep-Learning easily accessible to biologists.

Following Jean-Yves’ inspiring testimonial Jean-Yves Tinevez, I’m pleased to share some backstory chapters of the JDLL project! While the idea had been brewing in our minds for quite some time, it truly gained momentum during my UC3M Chair of Excellence stay at Arrate's lab Arrate Munoz Barrutia

Official release on Monday 😅

🔜Next Cell Biology & Infection seminar this Tuesday Aydogan Ozcan biophotonics@UCLA from UCLA Samueli Engineering Deep Learning-enabled Computational Microscopy and Diffractive Imaging Invited by BIA Unit

Hanson A, Reme R, Telerman N, Yamamoto W, Olivo-Marin JC, Lagache T, & Yuste R. Automatic monitoring of whole-body neural activity in behaving Hydra. bioRxiv, 2023-09. An open-source platform to monitor neurons’activity in behaving Hydra. #Hydra #Byotrack #TraseIn #Python #Icy

Tracking Intermittent Particles with Self-Learned Visual Features. R Reme, V Piriou, A Hanson ... 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), 1-5 Using visual features for single-particle tracking in fluorescence imaging. #Hydra #Byotrack #Python #icy

Icy (Taken from the BioEngine website.)

Coming soon to Icy ... Run #stardist on your images without code using the Bioimage.io models.💥💥 Thanks to #JDLL and #appose, we're bringing the power of Deep Learning and Python to the easy-to-use Java world. Much more is coming!

github.com/bioimage-io/JD…

#MiFoBio2023 Diffusion en direct de GDR Imabio - CNRS youtube.com/live/TBAqBz0VD… via YouTube

Thrilled to announce our latest paper, 'JDLL' is now published in @NatureMethods! A perfect start to the New Year 🥳 and a fantastic gift from the Reyes Magos! 🌟 Check it out here: rdcu.be/dvqwn Happy Reading & Happy New Year to all! 📚🎆 Icy deepImageJ

Out last week from the Tinevez and Olivo-Marin labs! JDLL: a library to run deep learning models on Java bioimage informatics platforms. This is sure to streamline deployment of DL models in bioimaging. nature.com/articles/s4159…

Super proud of this work and it was done with awesome colleagues. Let's now put this tool to good use!

Now available on Scientific Reports nature.com/articles/s4159…

🔬 Here are confocal micrographs of amoebae loaded on Fibronectin-coated glass or non-coated glass and labelled for F-actin 💡 👉 We show that E. histolytica adopts a fan-shape morphology on a Fibronectin substrate ‼️ journals.plos.org/plospathogens/…

👉See more: journals.plos.org/plospathogens/…

Watch out! Two of them are published in the latest issue of Nature Methods 🚀Omega: nature.com/articles/s4159… 🤖bioimage.io chatbot: nature.com/articles/s4159… Warming up! ☀️☀️☀️

It starts today ! imabio-cnrs.fr #RencontresImabio2024 CNRS 🌍 Université Grenoble Alpes

THE CELL TRACKING CHALLENGE 2nd Call for Cell Linking Submissions Deadline: Dec 1st, 2024 More info: celltrackingchallenge.net/ctc-vii/