Hello world! AxonDeepSeg is an #opensource #Python library (and GUI plugin for FSLeyes) to automatically segment myelin & axons in your microscopy data, using #NeuralNetworks / #DeepLearning / #MachineLearning. See our website for info, and follow us for news about the project!

Preprint is out now! Thank you Eric Burguiere C Schreiweis AxonDeepSeg Mathieu Boudreau Julien Cohen-Adad & Brahim Nait-Oumesmar

Eliana Lousada Christophe Leterrier We'd love to support your usecases Christophe Leterrier, and the beauty of AxonDeepSeg is that, by virtue of being open-source, you can help improve it 😊 You're welcome to spark a conversation in github.com/neuropoly/axon… too!

😍

We are happy to announce that a new version of SCT (v5.3.0) has been released! 🎉 Check out our announcement on INCF's NeuroStars.org Q&A forum: neurostars.org/t/spinal-cord-…

MRI in Canada: Julien Cohen-Adad Julien Cohen-Adad, professor Polytechnique Mtl Université de Montréal and Director of NeuroPoly, was interviewed by Audrey Fan Audrey Fan for the 2021 MRM Highlights Magazine (page 17). ISMRM #ISMRM #ISMRM21 #ISMRM2021 blog.ismrm.org/2021/05/14/mrm…

Delighted to see the first addition to #BIDS by the Microscopy BEP, introducing the sample entity - useful to differentiate different samples from the same subject! Great work by Marie-Hélène Bourget Julien Cohen-Adad and BEP031 team Satrajit Ghosh Excited for the next steps of this BEP!🎉

We are excited to announce the start of the community review for BEP031:Microscopy! The extension proposal may be viewed at: …cification--881.org.readthedocs.build/en/881/04-moda… and comments left on their pull request: github.com/bids-standard/… [1/3]

We're happy to share this co-first authored work by Simeon Daeschler Dr Gregory Borschel's lab SickKids Foundation & Marie-Hélène Bourget Julien Cohen-Adad's lab NeuroPoly. AxonDeepSeg was used to automatically segment myelinated peripheral nerves from light microscopic images. nature.com/articles/s4159…

We are excited to announce the publication & release of the #BIDS extension for #microscopy (BEP031), lead by NeuroPoly researcher Marie-Hélène Bourget. "Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data" Frontiers - Neuroscience frontiersin.org/articles/10.33…

Nouvel article en libre accès du prof. Julien Cohen-Adad et de son équipe, traitant d'une structure de données en imagerie médicale 🧠📝 #RecherchePolyMtl