Panchenko lab (@annapanchenko13) 's Twitter Profile
Panchenko lab

@annapanchenko13

Computational biology and biophysics @queensu, #epigenetics, #nucleosomes, #chromatin, #cancer.

ID: 1327777514807308289

linkhttps://panchenko-lab.org/ calendar_today15-11-2020 00:57:34

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Schlick Lab (@schlicklab) 's Twitter Profile Photo

Read my latest #research [authors.elsevier.com/c/1hUDz3PA3sV0…] on #Chromatin, #Genome, #Simulation, #HiC, #reconstruction, #Mesoscale, #Genes, #Modeling, #Methods, #Multiscale, published with Co Conscious Birth in Elsevier Tamar schlick

Musselman Lab (@musselmanlab) 's Twitter Profile Photo

Interested in the genome and attending #bps24? Join the MGO subroup and attend our symposium on Saturday which includes talks by Mario Halic HalicLab Emma Morrison Emma Morrison Alexey Shaytan Alexey Shaytan Remo Rohs Remo Rohs biophysics.org/store/products…

Panchenko lab (@annapanchenko13) 's Twitter Profile Photo

POLE variants promote genome-wide mutations in polypurine tracts - check out our paper by Daria Ostroverkhova in collaboration with Polina Shcherbakova's lab cell.com/cell-reports/f…

Kresten Lindorff-Larsen (@lindorfflarsen) 's Twitter Profile Photo

Happy to share the publication of our paper in nature Conformational ensembles of the human intrinsically disordered proteome Work led by Giulio Tesei and Anna Ida🕊. I'll post more later, but for now here is a link: nature.com/articles/s4158… and a short movie about the work

Teif Lab (@teiflab) 's Twitter Profile Photo

Excited to present the first ageing clock based on nucleosomics of cell-free DNA (cfDNA)! onlinelibrary.wiley.com/doi/10.1111/ac… ✅ Nucleosome repeat length increases with age ✅ Can predict age with ~3 year precision Congrats to Mariya Shtumpf, nrnflowers, Mila Bikova, Hulkar_M, Lumi Ruje!

Excited to present the first ageing clock based on nucleosomics of cell-free DNA (cfDNA)! onlinelibrary.wiley.com/doi/10.1111/ac…
✅ Nucleosome repeat length increases with age
✅ Can predict age with ~3 year precision
Congrats to <a href="/MShtumpf/">Mariya Shtumpf</a>, <a href="/nrnflowers/">nrnflowers</a>, <a href="/Milena_Bikova/">Mila Bikova</a>, <a href="/hulkar_m/">Hulkar_M</a>, <a href="/LumiRuje/">Lumi Ruje</a>!
Panchenko lab (@annapanchenko13) 's Twitter Profile Photo

Can next-generation pathogenicity predictors, like #AlphaMissense and VARITY, be effectively applied to cancer? Check out our study on a carefully designed experimental benchmark: biorxiv.org/content/10.110…

Remus T. Dame (@damelab) 's Twitter Profile Photo

Nice to see our manuscript on bacterial histone HBb from Bdellovibrio online: academic.oup.com/nar/advance-ar… Different from eukaryotic/archaeal histones, HBb binds and bends DNA as dimer. With Birte Hernandez Alvarez, Vikram Alva , Yimin Hu, @SammyBoterhammy , @MPI_Bio , Leiden Science

Remo Rohs (@remorohs) 's Twitter Profile Photo

Journal cover Nucleic Acids Res highlights our new method, RNAscape, for mapping base pairing and tertiary interactions in RNA structure: academic.oup.com/nar/article/52…. Same NAR issue features our new deep learning method to predict DNA shape: academic.oup.com/nar/article/52… USC Dornsife College of Letters, Arts & Sciences USC Research

Journal cover <a href="/NAR_Open/">Nucleic Acids Res</a> highlights our new method, RNAscape, for mapping base pairing and tertiary interactions in RNA structure: academic.oup.com/nar/article/52…. Same NAR issue features our new deep learning method to predict DNA shape: academic.oup.com/nar/article/52… <a href="/USCDornsife/">USC Dornsife College of Letters, Arts & Sciences</a> <a href="/USCResearch/">USC Research</a>
Panchenko lab (@annapanchenko13) 's Twitter Profile Photo

Our new nucleosome positioning prediction method has been published. If you want to use it or see which nucleosomal features are deemed important: academic.oup.com/nar/advance-ar…

Panchenko lab (@annapanchenko13) 's Twitter Profile Photo

Happy holidays, chromatiniers! Our new paper on histone cancer mutations and links to DNA repair: biorxiv.org/content/10.110…

Panchenko lab (@annapanchenko13) 's Twitter Profile Photo

Our study, in collaboration with Maria Aristizabal’s lab, predicted several histone cancer driver mutations with long-range allosteric effects and confirmed them experimentally: sciencedirect.com/science/articl…