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looking for a #rootecology #roots #postdocposition #postdoc? I have a post School of Natural Sciences, Trinity College Dublin identifying indicators of root health/physiology for new tech development. Part of a cool interdisciplinary project soon to be announced. Feel free to message me if you need any more details :)

Exciting new updates coming up for #Carbontracker. pedram --one of the current devs of #Carbontracker -- is busy making a wrapper for your scripts! Check out the dev branch, and if you do try it give us any feedback. github.com/lfwa/carbontra…

Larry M. York RhizoVision Explorer Joana Bergmann Combining RootPainter and RhizoVision Explorer saved the day 🥳Abraham George Smith Larry M. York

New Interactive Machine Learning Tool for Marine Image Analysis biorxiv.org/content/10.110…

Struggling with marine image analysis? Check out our recent work for a new solution! biorxiv.org/content/10.110… We used the user-friendly and open-source machine learning tool, RootPainter, to quickly and accurately extract sponge surface area measurements from marine images 🌊📸

Publication: Baykalov et al. compare methods for segmentation of plant #roots from RGB #minirhizotron & #rhizotron images - determining generalisation potentials & false positives. Read more about this exciting result of ATTRACT EU and FutureArctic-ITN - bit.ly/VSI-Seg

Deep-learning versus greyscale segmentation of voids in X-ray computed tomography images of filament-wound composites sciencedirect.com/science/articl…

Poppy Clark showing how interactive machine learning with RootPainter results in robust models and accurate species identification from marine images in a very short time. #MASTSASM23 MASTS Abraham George Smith #AI #CNN #biodiversity #deepsea

Toward improved image‐based root phenotyping: Handling temporal and cross‐site domain shifts in crop root segmentation models - Banet - 2024 - The Plant Phenome Journal acsess.onlinelibrary.wiley.com/doi/10.1002/pp… - I really enjoyed this collaboration and am happy to see this published.

I am hiring a postdoctoral researcher with my colleague Dr. Chen at ORNL to work on shoot and root responses to fungal and bacterial partners in Populus trees. Physiology, microbes, and image-based phenotyping all a plus. Check out the ad and please share! jobs.ornl.gov/Exempt/job/Oak…

An exciting PhD opportunity at the Department of Agroecology - Aarhus University on N2O emission and crop residue! Department of Agroecology phd.tech.au.dk/for-applicants…

📢PhD opportunities in Ecological Data Science as part of *Leverhulme DTP* On offer: fully funded deep-learning PhD project working with exciting long-term deep-sea acoustic and image datasets!🪸🐟📸🎤👩‍💻 👉More info here: ecological-data-science.github.io/projects.html #DeepSea #MachineLearning

Final days to apply to the Ecological Data Science Leverhulme DTP which offers an exciting array of data science and machine learning projects! More info here: ecological-data-science.github.io/projects.html Deadline: 5pm (GMT) on the 22nd March 2024. Tiffany Vlaar Abraham George Smith EcologicalDataSci

if you're looking for a PhD and are interested in #roots, #belowground dynamics, and links between plant physiology, soils and biogeochemistry, or using AI to help sample all the above, get in touch. I am definately recruiting at least one funded student this year, maybe more...

🚨New paper alert!🚨 Our work demonstrating the suitability of RootPainter, an interactive machine learning tool, to marine image analysis is now out in The Royal Society Open Science (1/3): royalsocietypublishing.org/doi/10.1098/rs…

Be sure to check out the paper and our handy handbook (zenodo.org/records/100132…) to see just how accessible RootPainter is, even for users without machine learning experience Huge thanks to my collaborators Abraham George Smith Daniel McKay Fletcher Ann Larsson Marine Biodiscovery Centre, UoA and Laurence De Clippele ! (3/3)

How do you boost AI model training efficiency? A team of Benthic Ecologists and Machine Learning Scientists dived into this at the Marine Animal Forest of the World training school! More on this topic coming soon ….! #AI #RootPainter #iML #BenthicEcology

PhD position in Data-driven plant phenotyping for discovering novel perennial traits with Eusun Han phd.tech.au.dk/for-applicants…

📢📢full funded (EU-UK) PhD project with me School of Natural Sciences, Trinity College Dublin doing cutting edge stuff with automated root measurements to understand ecosystem greenhouse gas fluxes: findaphd.com/phds/project/r… #roots #phdposition #rootecology

📢New Root paper: Accesible AI model for ecologists fails to catch roots in complex mature forest soil images from minirhizotrons 😭. More collaborative work needed! tiny.cc/0yhozz lead by Grace Handy w Abraham George Smith Daniela Yaffar Adriane Esquivel-Muelbert iEES Paris BIFoR