If you know a lot about #AMR mechanisms in a bacterial pathogen, consider joining us ESGEM.SG to share your expertise and develop #AMR rules for interpreting resistance-related genotypes in your favourite bug. bit.ly/AMRrules #ESCMIDGlobal2024

I've added another module to these notes on recursion and closures: iprogramming.bacpop.org/recursion.html

Excited to host Kate Baker Tuesday April 30 9-10am PST Microbial genomics for understanding the epidemiology and management of shigellosis calendar.ucsf.edu/event/eppicent…

Tomorrow is the early bird deadline for Genome Science UK, coming to Bristol 16-18 July!!!

bristol.genomescience.org.uk

ESGEM.SG is launching a working group to develop standards for interpreting #AMR genotypes. Much like EUCAST guidance for interpreting lab phenotypes as S/I/R, we want to define the #AMR rules for interpreting genotypes. #ESCMIDGlobal2024

Guess who's back? Genome Science 2024 is coming to Bristol July 16 - 18! Sign up here: bristol.genomescience.org.uk

I am hiring a research assistant for my lab working on host-pathogen interactions of bacterial infections.

Please send to anyone who might be interested.

jobs.cam.ac.uk/job/45921/

Do you work on:

💊 #antimicrobial discovery & mechanisms
🧬genomics
🦠epidemiology
🐷 #OneHealth
🌎 #antimicrobial policy
🩺or clinical studies?

If you work on any aspect of #antimicrobial s and/or resistance to them, we'd love to see your research npj Antimicrobials and Resistance!

We have now written up the paper for SKA2 (ska.rust):
biorxiv.org/cgi/content/sh…
This is the successor to SKA, which uses split k-mers XXXX[-]XXXX to rapidly variant call microbial genomes, either reference-free or reference-based

Best AFD I've seen so far today ...

Excited to share that our official website is now live 🎉🎉 Find out more about our team and our exciting research here sites.exeter.ac.uk/multidefence/

Amazing clinical fellow posts in medicine in Brighton for 2024-2025 jobs.nhs.uk/candidate/joba…

Closing date for this senior tech/project scientist role is tomorrow 21st March - check out the further particulars and if you think you are a good fit and you ❤️ the #microbiome - this might be the job for you!

Great set of events from WCS this week! Attendees from both #amrgenomics and #AMR2024 may be interested in our recent series from the SEDRIC genomics working group: thelancet.com/series/amr-gen…

Well done to the NGS Academy team and SANBI for successfully running a 2 week introduction to Bioinformatics for pathogen surveillance. The materials will be made available here: uct-cbio.github.io/ngs-academy/20….

So proud of this great team - go ladies!! #AMR2024

Dashboard: amrnet.org
Code: github.com/amrnet/amrnet

Next up Silvia Bertagnolio talking about World Health Organization (WHO) global #AMR #surveillance approach #AMR 2024

[Plasmid lover alert 🚨] in #AMR2024 - iuc3-harbouring F plasmid in Klebsiella pneumoniae by Ed Feil