Looking at the GeoMx spatial PKC file for the first time. It is a json file. Use jq command line tool to wrangle it digitalocean.com/community/tuto…

Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data biorxiv.org/content/10.110…

Looking at the GeoMx spatial PKC file for the first time. It is a json file. Use jq command line tool to wrangle it digitalocean.com/community/tuto…

Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data biorxiv.org/content/10.110…

TIM-3+ CD8 T cells with a terminally exhausted phenotype retain functional capacity in hematological malignancies science.org/doi/10.1126/sc…

mi-Mic: a novel multi-layer statistical test for microbiota-disease associations genomebiology.biomedcentral.com/articles/10.11…

Creating a Transformer From Scratch #deeplearning
Part Two: The Rest of the Transformer benjaminwarner.dev/2023/07/28/res…

Two cool new TCR embedding approaches out this week:
1. uniTCR - cell.com/cell-genomics/…
2. BERT-based - science.org/doi/10.1126/sc…

Genome assembly in the telomere-to-telomere era nature.com/articles/s4157…

ExpOmics: a comprehensive web platform empowering biologists with robust multi-omics data analysis capabilities biorxiv.org/content/10.110…

Revealing the Prevalence of Suboptimal Cells and Organs in Reference Cell Atlases: An Imperative for Enhanced Quality Control biorxiv.org/content/10.110…

Omics! Omics!: A Peek At QuantumSI's Protein Sequencer omicsomics.blogspot.com/2024/04/a-peek…