Share our new paper. Feng, DC.et al. The implications of single-cell RNA-seq analysis in prostate cancer: unraveling tumor heterogeneity, therapeutic implications and pathways towards personalized therapy. Military Med Res 11, 21 (2024). doi.org/10.1186/s40779…

Visualizing set relationships: EVenn's comprehensive approach to #Venn diagrams onlinelibrary.wiley.com/doi/full/10.10…
Available at: ehbio.com/test/venn
#Bioinformatics #visualization
Wiley in research Wiley Microbiology

Calls for Papers - Microbiome Toolbox: methods for bioinformatics, biotechnology, and metaomics
onlinelibrary.wiley.com/page/journal/2…
Guest Editor: Prof. Chao Jiang Chao Jiang

iMeta|Complete telomere-to-telomere assemblies of two sorghum genomes to guide biological discovery iMeta Wiley in research youtu.be/4cOyGGhaYhE

Our first attempt at decoding the evolutionary dynamics of human microbiomes is out Cell Reports, a long-time collaboration with Mike at Stanford at Larry at UCSF, Big congrats and thanks to Xin Wei Liang Liang Ming-Shian Tsai !! And I love the cover art candidate! 1/6

Using #PhyloSuite for molecular #phylogeny and #tree ‐based analyses onlinelibrary.wiley.com/doi/full/10.10…
Available at: github.com/dongzhang0725/…
#iTOL #alignment #phylogenetics
@Wileymicrobio Wiley Ecology & Evolution Wiley Plant Science

MetOrigin: Discriminating the origins of microbial #metabolites for integrative analysis of the #gut #microbiome and #metabolome
onlinelibrary.wiley.com/doi/10.1002/im…
Available at: metorigin.met-bioinformatics.cn
#bioinformatics #DataDriven
Wiley Microbiology Wiley Biomedical Science

How to name prokaryotes? Seqcode can give permanent names for uncultivated and non-preservable prokaryotes based on their genome sequences. The cover paper of #mLife new issue (Vol 3, No. 1) discussed why and how to use this amazing tool! Wiley Microbiology doi.org/10.1002/mlf2.1….

Complete #telomere ‐to‐telomere #assemblies of two #sorghum #genomes to guide biological discovery onlinelibrary.wiley.com/doi/full/10.10…
#NGS #reference #Bioinformatics
Wiley Plant Science Wiley in research

#Clinical features and #molecular landscape of #cuproptosis signature‐related molecular subtype in #gastric #cancer onlinelibrary.wiley.com/doi/full/10.10…
#CancerResearch #Bioinformatics #prognosis #MedTwitter
Wiley Biomedical Science Wiley Clinical Health

We just published a short paper on iMeta to introduce SeqKit's new functionality, performance optimizations, and improved user-friendliness, since the initial publication 7 years ago. onlinelibrary.wiley.com/doi/10.1002/im…

Pantera: Identification of transposable element families from pangenome polymorphisms biorxiv.org/content/10.110…

Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments | Nature Methods
nature.com/articles/s4159…

Types of cardiac inflammation

Credits: Cathy Cichon

#MedTwitter #MedEd #CardioTwitter #CardioEd

Our work recently was published in iMeta!👍 We introduced the most comprehensive Siderophore Information Database (SIDERTE) with 649 unique siderophores. And SIDERITE will be updated this month with 54 new siderophores!😁😁😁
Here is history of siderophore we summarized:

SIDERITE: Unveiling hidden #siderophore diversity in the #chemical space through digital exploration
Available at: siderite.bdainformatics.org/database
onlinelibrary.wiley.com/doi/full/10.10…
#database #structure #iron #microbiome
Wiley Microbiology Wiley Ecology & Evolution

iMeta | Arbuscular mycorrhizal fungal interactions bridge the support of root-associated microbiota for slope multifunctionality in an erosion-prone ecosystem iMeta Wiley Microbiology Wiley Ecology & Evolution youtu.be/t8j9k2XKZvQ

iMeta | Bacmethy: A novel and convenient tool for investigating bacterial DNA methylation pattern and their transcriptional regulation effects iMeta Wiley Microbiology youtu.be/BR_eyB-cv1E

#Microbiome ‐mediated alleviation of #tobacco replant problem via #autotoxin degradation after long‐term continuous #cropping onlinelibrary.wiley.com/doi/full/10.10…
#ecology #soil #replant #soil health
Wiley Microbiology Wiley Plant Science Wiley Ecology & Evolution

Interaction analyses — Appropriately adjusting for control variables by David Baranger in Towards Data Science buff.ly/3xjXPAV #rstats