Our preprint on how to use cDNA sequenced by PacBio and Oxford Nanopore for genome annotation. Thanks to all the people that contribute David E Cook Hanna Rovenich Alice Pajoro @Jaesvi42 Team Thomma @teamthomma.bsky.social biorxiv.org/content/early/…
Alexander Wittenberg Oxford Nanopore @Jaesvi42 @Clive_G_Brown Wouter De Coster That’s great. Our bioRxiv sequencing repeats in C9orf72 was just accepted in #MolecularNeurodegeneration . We sequences the repeat using PacBio and Oxford Nanopore in plasmids, but we couldn’t get enough WGS depth from the MinION for a human case. bit.ly/2NKOk1e
grandes chuppers, a por la final 4!!!!!! #sub21Estu Alejandro Calero @lucGpernas @CesarAlonso3 @Jaesvi42 Nicolás Araujo jaime sanchez bergua Jose María Rodes
FUDGE is out! Happy that our assay for rapid fusion gene detection using Oxford Nanopore sequencing got published today Nature Communications
Thanks to Glen Gijs van Haaften Wigard Kloosterman Anton Henssen @Jaesvi42 and EVERYONE else, it was fun working with you!
nature.com/articles/s4146…
Very happy that our CRISPR-Cas9 targeted nanopore sequencing approach is now in print Nature Communications! Congratulations Christina Stangl Gijs van Haaften @Jaesvi42 Wigard Kloosterman
@Jaesvi42 Oxford Nanopore @Clive_G_Brown Wouter De Coster Here at the UC Davis @GenomeCenter we do run long insert libraries sheared for 50 kb fragments on the #PromethION . The latest (and so far best) flowcell produced a read lengths N50 of 33kb and a yield of 92 Gb. These data are destined for de novo genome assemblies.
RT Jose María Rodes Play-Offs' week! Ya no hay margen de error #sub21Estu Alejandro Calero @lucGpernas @CesarAlonso3 @Jaesvi42 Nicolás Araujo jaime sanchez bergua
First on biorxiv, now in Plant Physiology our manuscript on improved eukaryotic genome annotation with long reads with David E Cook @Jaesvi42 luigi faino Hanna Rovenich plantphysiol.org/content/early/…
Yesterday @ #Fungal17 : Improve genome annotation using single-mol cDNA seq & Lo(ng)Re(ad)An(notation) by luigi faino David E Cook @Jaesvi42
Starting another week of our #nanoporeconf speaker announcements with Jose Espejo Valle-Inclan from University Medical Center Utrecht! Jose will be demonstrating NanoSV software for structural variation detection. Register today: bit.ly/2JhH0ck #nanoporeconf @Jaesvi42
¡Primers! Somos unos shempions @Jaesvi42 Roberto Martín . Casi resien lisensiados... instagram.com/p/oL4kjyN1Ee/
@Jaesvi42 from Cancer Center UMCU on identification of SV in #cfDNA #ctDNA with Oxford Nanopore #nanoporedayutrecht #nanoporeconf
The.best.annotation.pipeline.ever.period by luigi faino David E Cook @Jaesvi42 twitter.com/biorxivpreprin…
We will be recruiting a PhD student this year! Apply to join us (mariakalyva Hillary Elrick fmuyas @Jaesvi42 Carolin Sauer and others not on Twitter) at EMBL-EBI ! Application details below 👇